PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013602750.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 301aa MW: 33178.9 Da PI: 10.0292

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013602750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.4	3.4e-13	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l+ +v+++G+g Wk I r +R+ ++k++w+++ XP_013602750.1 5 KLKWTEEEEEALLAGVQKHGPGKWKNIIRDPEfadplYNRSNIDLKDKWRNL 56 689***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.907	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.37E-16	2	59	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-9	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-9	5	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-14	5	56	IPR009057	Homeodomain-like
CDD	cd11660	1.44E-12	7	56	No hit	No description
SMART	SM00526	1.6E-17	125	191	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	9.25E-14	126	206	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.4E-10	126	201	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	21.194	127	203	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	4.5E-10	129	201	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MGNHKLKWTE EEEEALLAGV QKHGPGKWKN IIRDPEFADP LYNRSNIDLK DKWRNLSVPA 60 DIQGSIDKVR TPKIKAAALN LAAVAAAATS TPPPSSATPS PVAPLPRSGS SDLNVDDSWN 120 TMVDAKNAPR YDGMIFEALS ALTDPSGSDV TTIFNFIEEK KHEVPPTFKR VLGSRLRRLA 180 AQGKIEKVNQ IRAGTQNFYR MNGTSFSGMR APVVARPKEV NVKPRQTNSQ RVLTVSQRKV 240 DQASGTAAFK LAEVEKNLEL VKRAAEHKER MIKLAEQAEI ILLLAEELHE ACSQGKIVEL 300 N

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013602750.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC172859	1e-149	AC172859.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrB023K01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013602750.1	0.0	PREDICTED: telomere repeat-binding factor 4-like
Swissprot	F4I7L1	1e-118	TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBL	A0A0D3DWT3	0.0	A0A0D3DWT3_BRAOL; Uncharacterized protein
STRING	Bo8g104830.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2321	28	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	1e-102	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]