PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602497.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 210aa    MW: 23102.8 Da    PI: 7.8131
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602497.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.27e-3246100358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     k++Y+eClkNhA+++ ghavDGC+Efmps ge+g+ +alkCaACgCHRnFHR+e+e
  XP_013602497.1  46 KTKYRECLKNHAVNIAGHAVDGCCEFMPS-GEDGSLDALKCAACGCHRNFHRKETE 100
                     789*************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2447100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-284799IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.2E-284898IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5224998IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.1E-32133209IPR009057Homeodomain-like
SuperFamilySSF466892.83E-20135208IPR009057Homeodomain-like
TIGRFAMsTIGR015654.6E-27148204IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MNFEEQEEEM EMSGVHPPGG YDSMSGEGAT SSGGGGGGRR TSVGEKTKYR ECLKNHAVNI  60
AGHAVDGCCE FMPSGEDGSL DALKCAACGC HRNFHRKETE MVSGRAHIVP TYYNRPPQLP  120
PPGYRQPAAS ADEEDTSNPS SSGGTKAKRF RTKFTAEQKE KMFAFAERLG WRMQKHDDVA  180
VEQFCAETGV RRQVLKIWMH NNKNSLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-361472051775ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602497.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894070.0AC189407.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB059G16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602497.11e-158PREDICTED: zinc-finger homeodomain protein 2-like
RefseqXP_013723545.11e-158zinc-finger homeodomain protein 2
SwissprotQ9SB611e-115ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A078F3421e-157A0A078F342_BRANA; BnaC08g11750D protein
TrEMBLA0A0D3DMR71e-157A0A0D3DMR7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GDW61e-157A0A3P6GDW6_BRAOL; Uncharacterized protein
STRINGBo8g050400.11e-157(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45052454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-97homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]