PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013602065.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 236aa    MW: 25877.9 Da    PI: 7.468
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013602065.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.9e-18161195135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  XP_013602065.1 161 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 195
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.2E-824236IPR016679Transcription factor, GATA, plant
SMARTSM004013.8E-16155205IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.952155191IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15157219No hitNo description
Gene3DG3DSA:3.30.50.109.9E-14158193IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.46E-14160207No hitNo description
PROSITE patternPS003440161186IPR000679Zinc finger, GATA-type
PfamPF003206.2E-16161195IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDVYGGLSSP DLLRIDDLLD FSNDEIFSSS STVASSAASS SENPFNFHAS PPPPPPLLTD  60
FTHDLCVPSD DAAHLEWVSR FVDDSFSDYP ANPLTVNVRP DAPFTGKPRS RRSRAPSSPS  120
LAGTWAPMPE SELCYSVAKR SPSKKLEVES VTADGGGGRR CTHCASEKTP QWRTGPLGPK  180
TLCNACGVRF KSGRLVPEYR PASSPTFVLT QHSNSHRKVM ELRRQKEQIE SRFQPQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013602065.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893190.0AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602065.11e-173PREDICTED: GATA transcription factor 4
SwissprotO497431e-116GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A0D3DUM61e-172A0A0D3DUM6_BRAOL; GATA transcription factor
TrEMBLA0A3P6GGC01e-172A0A3P6GGC0_BRAOL; GATA transcription factor
STRINGBo8g095280.11e-173(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-107GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]