PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013601909.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 239aa MW: 27263.4 Da PI: 6.5139 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 132.4 | 3.1e-41 | 5 | 132 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +G+rF Ptdee+v++yL+ k g + +++evi++v+i++++PwdLp ++++++++ w+fF ++++ky++g+r++r+tksg+Wk+tg++ +++ XP_013601909.1 5 VGLRFIPTDEEIVDHYLRLKNIGGSntSHVDEVISTVNICNFDPWDLPpqSRIASSDQVWHFFGRKESKYNKGERQKRKTKSGFWKKTGNTLPIK 99 7*****************997666645677789**************86458889999************************************* PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k +++++g k++Lvfy ++g+k++Wvmhey++ XP_013601909.1 100 RKrgNRQKIGEKQVLVFY----KNGSKSNWVMHEYHA 132 99888889**********....7899*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 41.202 | 3 | 151 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-42 | 4 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-22 | 5 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MENLVGLRFI PTDEEIVDHY LRLKNIGGSN TSHVDEVIST VNICNFDPWD LPPQSRIASS 60 DQVWHFFGRK ESKYNKGERQ KRKTKSGFWK KTGNTLPIKR KRGNRQKIGE KQVLVFYKNG 120 SKSNWVMHEY HASCLSPPQS GAYTICKVQF KGEASEISSS SGVDNVEHSP TPMTNPESPS 180 QFSGFRDHQQ EMQFEAETQT DFEELLSYDL SSLLDYDGDE QIEIASMQKS MTSIFIGHI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-23 | 6 | 131 | 18 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 101 | KRKTKSGFWKKTGNTLPIKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013601909.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013601909.1 | 0.0 | PREDICTED: NAC domain-containing protein 4-like | ||||
Swissprot | O81913 | 1e-79 | NAC4_ARATH; NAC domain-containing protein 4 | ||||
TrEMBL | A0A0D3DZB1 | 1e-179 | A0A0D3DZB1_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g117570.1 | 1e-180 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02230.1 | 5e-79 | NAC domain containing protein 4 |
Publications ? help Back to Top | |||
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