PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601822.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20149.2 Da    PI: 10.0479
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.18.6e-221859243
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    +ie +s rqv fskRr+g++KKA+EL++LC++eva+i+fs  
  XP_013601822.1 18 KIEKESHRQVAFSKRRAGLFKKASELCTLCGVEVAIIVFSLA 59
                    69*************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-26968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.623969IPR002100Transcription factor, MADS-box
CDDcd002657.43E-331086No hitNo description
SuperFamilySSF554551.57E-271092IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-171131IPR002100Transcription factor, MADS-box
PfamPF003194.2E-241865IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MTSKKKGSSG RQRIRMAKIE KESHRQVAFS KRRAGLFKKA SELCTLCGVE VAIIVFSLAK  60
KPFSFGHPSV YSVLDRYRNN TSFQQQSQPM ENTATRSELS LVLSQVEEEK KKGEEMRKAS  120
EMAKWSVDEM SLLQLQEMRY ALEELRNTMV VPPPSYMNPM STGFSCIYNS SYVHASS
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the final stages of embryo sac development. {ECO:0000269|PubMed:18713950}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in the central cell of the female gametophyte and in early endosperm. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601822.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601822.11e-130PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ4PSU49e-59AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A397Y5G31e-114A0A397Y5G3_BRACM; Uncharacterized protein
STRINGBra026764.1-P1e-104(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-49AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]