PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013601544.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 172aa MW: 19472.8 Da PI: 6.1613 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.9 | 1.2e-15 | 54 | 138 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk l ++sg +++p f+++h +g k+++kt +l++ s ++Wev + + +lt+GWk+F a++L+ gD v+Fk++g++ f + XP_013601544.1 54 FFKPL--LPGFQSG-VTIPLAFFSKHiEG-KTNQKTWKLRSdASDQTWEVIQ--EDR----TLTRGWKDFTTAHDLQIGDLVIFKHEGDMVF--H 136 66666..6667776.9**********654.467789***997889*****99..444....4***********************9999988..7 PP EE CS B3 94 vk 95 v+ XP_013601544.1 137 VT 138 66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-21 | 46 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-20 | 49 | 149 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.632 | 51 | 143 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.25E-16 | 52 | 140 | No hit | No description |
SMART | SM01019 | 3.3E-18 | 54 | 143 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-10 | 62 | 135 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MSKLIYAYTF VVVNGSRYSH EWIQAQGYEG GQAQHNQAGS FGTMKMANPH EPHFFKPLLP 60 GFQSGVTIPL AFFSKHIEGK TNQKTWKLRS DASDQTWEVI QEDRTLTRGW KDFTTAHDLQ 120 IGDLVIFKHE GDMVFHVTPF GPSCCEIQYT HPHIIKEEAD AGDADDNEIS KS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013601544.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189464 | 1e-170 | AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013601544.1 | 1e-128 | PREDICTED: B3 domain-containing protein REM9-like | ||||
Swissprot | O81778 | 4e-44 | REM9_ARATH; B3 domain-containing protein REM9 | ||||
TrEMBL | A0A0D3B6X9 | 2e-92 | A0A0D3B6X9_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g039030.1 | 3e-93 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 3e-46 | B3 family protein |
Publications ? help Back to Top | |||
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