PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013601433.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 110aa MW: 12659.7 Da PI: 8.8425

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013601433.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43	8.2e-14	21	100	12	94
HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++ l +p fa+ h +k + k++t+ +++g sWev + ++ r ++++GW + v++ L +gDf+++k+++ +ef+l v XP_013601433.1 21 YLKFLPIPTYFADVHI-PK-TYKMVTIHHSNGnCSWEVVC--LVRKTRATFSSGWARLVREYPLSVGDFCTLKFIKPTEFHLAV 100 4566889**97774.33.45689999988879**..66667788*********************99988885544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.53E-19	7	101	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.5E-17	7	102	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.546	10	104	IPR003340	B3 DNA binding domain
CDD	cd10017	2.10E-10	11	102	No hit	No description
SMART	SM01019	2.2E-14	13	104	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.0E-12	17	100	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MKSNNDEDTV PVFNITIKTS YLKFLPIPTY FADVHIPKTY KMVTIHHSNG NCSWEVVCLV 60 RKTRATFSSG WARLVREYPL SVGDFCTLKF IKPTEFHLAV SKKVEEIMSD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013601433.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013601433.1	6e-78	PREDICTED: B3 domain-containing protein At3g17010-like
Swissprot	Q9LSP6	2e-33	Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBL	A0A0D3DNY9	2e-75	A0A0D3DNY9_BRAOL; Uncharacterized protein
STRING	Bo8g059570.1	3e-76	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17010.1	9e-36	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]