PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601330.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 522aa    MW: 58871.7 Da    PI: 5.0711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.5e-20150200255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr ++ +g+++AeIrdp   + + +r++lg+f+ta eAa+a+++a+ +l+g
  XP_013601330.1 150 HYRGVRMRP-WGKFAAEIRDP---NrRGTRVWLGTFDTAIEAARAYDQAAFRLRG 200
                     7********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-32149209IPR001471AP2/ERF domain
PfamPF008474.0E-14150200IPR001471AP2/ERF domain
SMARTSM003801.3E-35150214IPR001471AP2/ERF domain
PROSITE profilePS5103223.973150208IPR001471AP2/ERF domain
CDDcd000185.89E-29150208No hitNo description
SuperFamilySSF541713.73E-22150210IPR016177DNA-binding domain
PRINTSPR003674.6E-10151162IPR001471AP2/ERF domain
PRINTSPR003674.6E-10174190IPR001471AP2/ERF domain
SMARTSM011792.1E-55324462IPR008580PPPDE putative peptidase domain
PfamPF059037.9E-47325459IPR008580PPPDE putative peptidase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MATPSEASAL SFIKKHLLDE SSPLPKVTTT NPWIASETIS NFSIFGSFDQ TGFDFSEFET  60
KPEITDLVTH RFTDLFESEP EANAEIQLAS SESFTFQSNP RGVSGPASRS NRKPPLKIEP  120
PSRTEWIQFA TENPQPEQLP VHVAAEEKRH YRGVRMRPWG KFAAEIRDPN RRGTRVWLGT  180
FDTAIEAARA YDQAAFRLRG SKAIVNFPLE VGTWNQRADV GQNKRKRDGE GEEVTVVAKV  240
LKTEESHAVE TETSSLTAVD DWDLTELLSM PLLSPLSPHP PFGYPQLTVV AEFKEKRRDE  300
MWVPTLSSSS CSSDENTGEE ARLTPVYLNV YDLTPVNNYL YWFGIGIFHS GIESHGLEYC  360
YGAHEYPTSG VYEVEPKNCP GFIFRRSVLL GTTTMSRSDF RSYMEKLSRK YHGDTYHLIA  420
KNCNHFTEQV CLQLTGKPVP GWINRLARVG SFCNCLLPES IQLTAVSAPS ERLEFSDEDE  480
SNSEASSVSD DEGPEHRLIN VADREVVYLQ NKPVRLTREE IH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-28149211163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-28149213468ATERF1
3gcc_A7e-28149213468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2367910.0AC236791.1 Brassica napus clone JBr38I20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601330.10.0PREDICTED: ethylene-responsive transcription factor 6-like
TrEMBLA0A0D3DMH20.0A0A0D3DMH2_BRAOL; Uncharacterized protein
STRINGBo8g049450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-113ethylene responsive element binding factor 6