PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013601041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 258aa MW: 28876.6 Da PI: 6.0726 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F ++ L H +H XP_013601041.1 83 FQCKACKKVFASHQALGGHRASH 105 89**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.79E-6 | 82 | 105 | No hit | No description |
Pfam | PF13912 | 2.3E-9 | 82 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.014 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.098 | 83 | 105 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:1.10.601.10 | 3.2E-4 | 116 | 152 | No hit | No description |
SuperFamily | SSF57667 | 7.79E-6 | 158 | 185 | No hit | No description |
Pfam | PF13912 | 1.0E-12 | 162 | 186 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.65 | 163 | 185 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.328 | 163 | 185 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 165 | 185 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MQNSSCIDLV MFSSRGQHDE GNMSRPPWKR ERSNHHLNLY PNEDEELANC LVLLSNSGNA 60 YNNNKHGHGK SKTVKKQKTA HVFQCKACKK VFASHQALGG HRASHKKVKG CFASQDKEEE 120 EEEDEYKEDD DEEEEDEDAE EEEEEDKPTA AAHIIARKRS NAHECTVCHR VFSSGQALGG 180 HKRCHWLTPS TYLRMTPLHD SSAVRSQALD QPSLDLNLAC QEYSVDPTTM SVGRDGGGNI 240 HNATSSNSWL KLASGDWS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 25 | 32 | PPWKRERS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013601041.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013601041.1 | 0.0 | PREDICTED: zinc finger protein ZAT2-like | ||||
TrEMBL | A0A0D3DZH4 | 0.0 | A0A0D3DZH4_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g118200.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13895 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 1e-24 | C2H2-like zinc finger protein |