PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013600687.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 315aa    MW: 35146.2 Da    PI: 7.5055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013600687.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-12127173455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++N+++  L  llP +     kK +Ka++Le A++++k Lq
  XP_013600687.1 127 EHVLAERKRRQKLNERLIALSALLPGL-----KKADKASVLEDAIKHLKRLQ 173
                     5889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.421123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-10127173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-15127183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-15127186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-11128177No hitNo description
SMARTSM003531.8E-13129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007029Biological Processendoplasmic reticulum organization
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEDSSFTDLM LDTDEYLIDD WESDFPVVPG ETMDHRSESE SGFMLIPERP TKQLKVNSTS  60
SSPSSSSSSG SLTTPQVISF GAPDPKMNLV ETSFNFSNQA NMNQNAGSKI KDCGNNGGKR  120
EPHLLKEHVL AERKRRQKLN ERLIALSALL PGLKKADKAS VLEDAIKHLK RLQERVKKLE  180
EERVGTKKMD QSVILVKRSQ VYVEDDSSSY SSTCSAASPP PSSLDEVSIL KQTMPMIEAR  240
VSDRDLLIRI HCEKNKGCLV KILSSLEKFR LEVVNSFTLP FGSKTLVITI LSKMDNKFSR  300
PIEDVVKNIR LALAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136ERKRRQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates the expression of at least NAI2, PYK10 and PBP1. Required for and mediates the formation of endoplasmic reticulum bodies (ER bodies). Involved in the symbiotic interactions with the endophytes of the Sebacinaceae fungus family, such as Piriformospora indica and Sebacina. {ECO:0000269|PubMed:12581307, ECO:0000269|PubMed:15155889, ECO:0000269|PubMed:15919674, ECO:0000269|PubMed:18248598, ECO:0000269|PubMed:18467340, ECO:0000269|PubMed:18780803}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013600687.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600686.10.0PREDICTED: transcription factor NAI1-like
RefseqXP_013600687.10.0PREDICTED: transcription factor NAI1-like
SwissprotQ8S3F11e-157BH020_ARATH; Transcription factor NAI1
TrEMBLA0A078IRX00.0A0A078IRX0_BRANA; BnaC08g49160D protein
TrEMBLA0A0D3DVY60.0A0A0D3DVY6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FK390.0A0A3P6FK39_BRAOL; Uncharacterized protein
STRINGBo8g100870.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.11e-157bHLH family protein
Publications ? help Back to Top
  1. Hakenjos JP, et al.
    ML3 is a NEDD8- and ubiquitin-modified protein.
    Plant Physiol., 2013. 163(1): p. 135-49
    [PMID:23903439]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoshii M,Yamamoto A,Kagaya Y,Takeda S,Hattori T
    The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10, a seedling-specific gene upon embryonic-to-postgerminative developmental phase transition.
    Plant Signal Behav, 2015. 10(12): p. e1105418
    [PMID:26479492]