PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013600568.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 325aa MW: 36893.6 Da PI: 6.8998 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.9 | 6.3e-07 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+ lC+ffa G C Gd+C F+H+ XP_013600568.1 3 KRILCKFFAH-GACLKGDNCEFSHD 26 889***6666.*************5 PP | |||||||
2 | zf-CCCH | 25.3 | 2.6e-08 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f++r G C+yG+rC++ H+ XP_013600568.1 34 ICTFYQR-GNCSYGSRCRYEHV 54 7**9999.***********997 PP | |||||||
3 | zf-CCCH | 22.5 | 2e-07 | 107 | 129 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ +a+ G C++Gd+C+ +Hg XP_013600568.1 107 QPICS-YAAAGDCPRGDQCPHIHG 129 68999.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.4E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.187 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.051 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5E-5 | 31 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 31 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-5 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-5 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.507 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0025 | 105 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-4 | 107 | 129 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 2.27E-13 | 163 | 237 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 9.8E-10 | 166 | 232 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 8.97E-4 | 172 | 232 | No hit | No description |
Pfam | PF00097 | 5.1E-7 | 173 | 230 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.297 | 173 | 231 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 2.8E-7 | 173 | 230 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 197 | 206 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.54 | 260 | 288 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.103 | 260 | 289 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MSKRILCKFF AHGACLKGDN CEFSHDWKDP SNNICTFYQR GNCSYGSRCR YEHVKPSRPP 60 HPSPASSSTY LSSAFVSERD LSSSPAWTLA SLDDEVNNTD ATKPEDQPIC SYAAAGDCPR 120 GDQCPHIHGD LCPTCQKHCL HPFRPEEREE HKRSCEKKHK QLEALKLSQD VECCVCLERV 180 LSKPTPAERK FGILTECDHA FCIGCIRNWR SSAPSTGMDV NSTLRACPIC RKLSYFVVPS 240 VIWFSDPDEK KEIMDNYRDK LRSIDCKHFN FGDGNCPFGT SCFYKHAFHD GRLEEVVLRH 300 LDAEDGQTVI AKDIRLSDFL ENMHI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.7881 | 1e-152 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013600568.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189271 | 0.0 | AC189271.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013600568.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X1 | ||||
Swissprot | E0X9N4 | 0.0 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A397YFG4 | 0.0 | A0A397YFG4_BRACM; Uncharacterized protein | ||||
STRING | Bo8g071350.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2944 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-163 | C3H family protein |
Publications ? help Back to Top | |||
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