PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013600485.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 383aa    MW: 43779.9 Da    PI: 6.4663
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013600485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.46.8e-2780174185
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                     +Wt+++v++Li+a+++++++++ +          +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d++
  XP_013600485.1  80 KWTDKMVKLLITAVSYIGDDSSMDGgsrrkfaalQKKGKWKSVSKVMSERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPKLLDSI 174
                     7**************8888887543345556677**********************************************669999999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2478201No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDGKLPQGVA VRGGASSYGG FDLQGPMSQH LQGLPFAMVS GQTCGHHLSE QHKGERESDD  60
DEQPSFNEEA TKGSPWQRVK WTDKMVKLLI TAVSYIGDDS SMDGGSRRKF AALQKKGKWK  120
SVSKVMSERG YHVSPQQCED KFNDLNKRYK KLNDMLGRGT SCQVVENPKL LDSIGYLNDK  180
EKDDVRKIMS SKQLFYEEMC SYHNGNRLHL PHDFALQRSL QVALRSRDDQ HRVEDLDDED  240
HDGEGDEHDD DVDHGDCRVV GGPLKRARQS HSHSHEGVDH QGHVNSLECN KVTLALPQGG  300
AESGRSASVQ KQLIESRTLQ LEEQKLQIQV ELLELEKQRF RWERFSKKRD QELERMRMEN  360
ERMKLENDRM GLELKQRELG VEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013600485.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0458501e-134AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankAY0913781e-134AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankCP0026841e-134CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16F41e-134AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600485.10.0PREDICTED: uncharacterized protein LOC106307934
RefseqXP_013680749.10.0uncharacterized protein LOC106385361
RefseqXP_013687011.10.0uncharacterized protein LOC106390990
TrEMBLA0A078H8550.0A0A078H855_BRANA; BnaC08g19740D protein
TrEMBLA0A0D3DQQ60.0A0A0D3DQQ6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G9U70.0A0A3P6G9U7_BRAOL; Uncharacterized protein
STRINGBo8g070690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-180sequence-specific DNA binding transcription factors