PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013600436.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 307aa    MW: 34489 Da    PI: 9.8459
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013600436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.13.5e-1640123186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  v  L+ea++ ++   +r+klk+++We+v+k++    ++++  ++++qCk+k+e+++kry+ + +++ +      s++p++++l+
  XP_013600436.1  40 EWSEGAVSSLLEAYETKWVLRNRAKLKGQDWEDVAKHVssraSHTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYSRLD 123
                     5*************************************87766777788999*****************99997......46****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-2038125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEDGDSNQEH PQPLTTNHDA SSPKKPSTSS IVVDRLKRDE WSEGAVSSLL EAYETKWVLR  60
NRAKLKGQDW EDVAKHVSSR ASHTKSPKTQ TQCKNKIESM KKRYRSESAT ADGSSWPLYS  120
RLDHLLRGNA STSVQPQPQA VLPLNCSAPL LLLEPPSLAV THPPQQPPAA QMSHGSNGVG  180
TIKEEGFKDD HKPERATEMD TDSSTPVLCR EKAKVRPKKV RRRYKEEKEE IAGSIRWLAE  240
VVMRTERARM ETMKEIEKMR AEAEVKRGEM DLKRTEIMAN TQIEIARLFA ASVQKGGVDS  300
SLRIGRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013600436.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600436.10.0PREDICTED: trihelix transcription factor ASIL1 isoform X2
TrEMBLA0A3P6GKK70.0A0A3P6GKK7_BRAOL; Uncharacterized protein
STRINGBra007069.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-145sequence-specific DNA binding transcription factors