PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013600435.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 317aa MW: 35601.5 Da PI: 9.8391 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51 | 3.7e-16 | 40 | 123 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v+k++ ++++ ++++qCk+k+e+++kry+ + +++ + s++p++++l+ XP_013600435.1 40 EWSEGAVSSLLEAYETKWVLRNRAKLKGQDWEDVAKHVssraSHTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYSRLD 123 5*************************************87766777788999*****************99997......46****9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.4E-20 | 38 | 125 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MEDGDSNQEH PQPLTTNHDA SSPKKPSTSS IVVDRLKRDE WSEGAVSSLL EAYETKWVLR 60 NRAKLKGQDW EDVAKHVSSR ASHTKSPKTQ TQCKNKIESM KKRYRSESAT ADGSSWPLYS 120 RLDHLLRGNA STSVQPQPQA VLPLNCSAPL LLLEPPSLAV THPPQQPPAA QMSHGSNGVG 180 TIKVTKPILL CFPEEGFKDD HKPERATEMD TDSSTPVLCR EKAKVRPKKV RRRYKEEKEE 240 IAGSIRWLAE VVMRTERARM ETMKEIEKMR AEAEVKRGEM DLKRTEIMAN TQIEIARLFA 300 ASVQKGGVDS SLRIGRN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013600435.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013600435.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL1 isoform X1 | ||||
TrEMBL | A0A3P6GKK7 | 0.0 | A0A3P6GKK7_BRAOL; Uncharacterized protein | ||||
STRING | Bra007069.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9859 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 1e-142 | sequence-specific DNA binding transcription factors |