PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013600065.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 301aa    MW: 32898 Da    PI: 8.4864
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013600065.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.8e-19148202256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq  +Lee F+++++++ +++  LAk+l+L +rqV vWFqNrRa+ k
  XP_013600065.1 148 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTK 202
                     788899***********************************************98 PP
2HD-ZIP_I/II1231.5e-39148237191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  XP_013600065.1 148 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVSELR-AL 237
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.6E-351105IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.0E-19128202IPR009057Homeodomain-like
SuperFamilySSF466895.13E-19129205IPR009057Homeodomain-like
PROSITE profilePS5007117.313144204IPR001356Homeobox domain
SMARTSM003892.6E-15146208IPR001356Homeobox domain
CDDcd000868.31E-14148205No hitNo description
PfamPF000463.8E-16148202IPR001356Homeobox domain
PROSITE patternPS000270179202IPR017970Homeobox, conserved site
SMARTSM003401.6E-26204247IPR003106Leucine zipper, homeobox-associated
PfamPF021835.4E-11204238IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGERDDGLGL SLSLSLGLNQ KESTPRLNPT PMASYSSSSH MHMQNSWIQM FQSSERNSDV  60
GSFLRGLDVN RAPSRVVVDV EEDAGVSSPN STVSSVMSGK RNERELVAAA GAGGGRTIED  120
NETERGSSSL GGGSDDEDGG GNGDDGSRKK LRLSKEQALV LEETFKEHST LNPKQKMALA  180
KQLNLRTRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCENL TEENRRLQKE VSELRALKLS  240
PQLYMHMKPP TTLTMCPSCE RVAVASSSVA PAPVMSSSSP MGPMSPWAAI PLRQRPAAGS  300
R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146152SRKKLRL
2196204RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013600065.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600065.10.0PREDICTED: homeobox-leucine zipper protein HAT3
SwissprotP466021e-165HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0D3DUL10.0A0A0D3DUL1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GPV20.0A0A3P6GPV2_BRAOL; Uncharacterized protein
STRINGBo8g095130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-121homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]