PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013599996.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 289aa MW: 31897.3 Da PI: 8.6787 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.4 | 7.7e-14 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l+ +v+++G+g Wk I r +R+ ++k++w+++ XP_013599996.1 5 KLKWTEEEEEALLAGVRKHGPGKWKNILRDPEfagqlSNRSNIDLKDKWRNL 56 689***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.046 | 1 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.38E-16 | 3 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-9 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-15 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.8E-10 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.39E-14 | 7 | 56 | No hit | No description |
SMART | SM00526 | 1.3E-15 | 121 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 4.9E-11 | 122 | 187 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 21.448 | 123 | 192 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 9.25E-14 | 124 | 192 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 9.2E-10 | 125 | 185 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MGNQKLKWTE EEEEALLAGV RKHGPGKWKN ILRDPEFAGQ LSNRSNIDLK DKWRNLSVAP 60 DIQGSKDKVR TPKIKAAAFQ LAAVAAASTP SPSSNHSPVP PLPRSGSDLS IDDSCNFMAD 120 AKNAPRYDGM IFEALSSLTD ANGSDVTAIY NFIVQKGHEV PPNFKRILGS RLRRLASQGK 180 LEKTQNFYKM NNHSFMAMRT PLVARPKEVN VKPRQANSQG LAVSQEKVDH AAGTAAFKFV 240 EVDEKLELLN AAVEDRDRMI ELAEQAELIL LLAEELHKEC SEGKIVALN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013599996.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC172887 | 1e-136 | AC172887.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004B22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013599996.1 | 0.0 | PREDICTED: telomere repeat-binding factor 4-like isoform X2 | ||||
Swissprot | F4I7L1 | 1e-125 | TRB4_ARATH; Telomere repeat-binding factor 4 | ||||
TrEMBL | A0A397YED9 | 0.0 | A0A397YED9_BRACM; Uncharacterized protein | ||||
STRING | Bo8g067280.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 1e-111 | MYB_related family protein |
Publications ? help Back to Top | |||
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