PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013599969.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 327aa    MW: 36832.8 Da    PI: 7.8496
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013599969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.4e-07326226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k+ lC+ffa  G C  Gd+C F+H+
  XP_013599969.1  3 KRILCKFFAH-GACLKGDNCEFSHD 26
                    889***6666.*************5 PP
2zf-CCCH246.6e-083454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C f++r G C+yG+rC++ H+
  XP_013599969.1 34 VCTFYQR-GLCSYGSRCRYEHV 54
                    5999999.***********997 PP
3zf-CCCH21.54.1e-07108131226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+ +a+ G C++G++C+ +Hg
  XP_013599969.1 108 DQPICS-YAAAGDCPRGNQCPHIHG 131
                     578999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-7326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3992956IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-43155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-53153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-43453IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.99106133IPR000571Zinc finger, CCCH-type
SMARTSM003560.0084107132IPR000571Zinc finger, CCCH-type
SuperFamilySSF578503.53E-13165239No hitNo description
Gene3DG3DSA:3.30.40.101.3E-9168234IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001628.72E-4174234No hitNo description
PfamPF000976.2E-7175232IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.238175233IPR001841Zinc finger, RING-type
SMARTSM001845.3E-7175232IPR001841Zinc finger, RING-type
PROSITE patternPS005180199208IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.54262290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103262291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSKRILCKFF AHGACLKGDN CEFSHDWKDP TNNVCTFYQR GLCSYGSRCR YEHVKLKPHP  60
SPASSSSALP RSSASEKDLS PLPSSPAWTS DSSDNTFTFS SSTSKPQDQP ICSYAAAGDC  120
PRGNQCPHIH GDLCPTCGKR CLHPFRPEER EEHKKACEKK HKQLEALKLS QEVECCVCLE  180
RVLSKPTPAE RKFGLLTECD HAFCIGCIRN WRSSSPSTGM DVNSTLRACP ICRKLSYFVV  240
PSVIWFSAPE EKKEIMDNYR DKLRSIDCKH FNFGDGNCPF GTSCFYKHAF HDGRLEEVVL  300
RHLDAEDGQT VIAKDIRLSD FLEGMRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.78810.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013599969.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892711e-178AC189271.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599969.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like
SwissprotE0X9N40.0C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A0D3DLB30.0A0A0D3DLB3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GCM80.0A0A3P6GCM8_BRAOL; Uncharacterized protein
STRINGBo8g032490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-152C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]