PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013599911.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 381aa MW: 43877.2 Da PI: 8.3358

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013599911.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.3	7.7e-27	76	157	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++ +s +++y++++e XP_013599911.1 76 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHRDRGN---RSAKMSYYKEIE 157 ******************************************************************95...566899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-4	66	137	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.979	68	132	IPR017877	Myb-like domain
SMART	SM00717	0.0096	72	134	IPR001005	SANT/Myb domain
CDD	cd12203	3.05E-29	74	139	No hit	No description
Pfam	PF13837	3.4E-20	75	159	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MFVSDKPRPI DFYKDDNTTT TTARDNMIID VTTNTPGRDL HPHHHHHHLQ PQQILLGESS 60 GEDHEVKAPK KRAETWVQDE TRSLIMFRRG MDGLFNTSKS NKHLWEQISA KMREKGFDRS 120 PTMCTDKWRN LLKEFKKAKH RDRGNRSAKM SYYKEIEEIL RERSKKVTAT GQYSKSPNAT 180 ATAKVDSFMQ FTDKANGRPA LNLERRLDHD GHPLAIATVD VVAANGVPPW NWRETPGNGG 240 DSHGQPFGGR VITVKFGDYT RRIGVDGSTE AIKDTIRSAF GLRTRRAFWL EDEDQVVRCL 300 DRDMPLGNYL LHVDDGLAIR VCHYDESNQL PVHTEEKVFY TEEDYRDFLA RRGWTCLQFD 360 GFRNIDNMDD LQPGAVYRGV R

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MFVSDKPRPI DFYKDDNTTT TTARDNMIID VTTNTPGRDL HPHHHHHHLQ PQQILLGESS  60
GEDHEVKAPK KRAETWVQDE TRSLIMFRRG MDGLFNTSKS NKHLWEQISA KMREKGFDRS  120
PTMCTDKWRN LLKEFKKAKH RDRGNRSAKM SYYKEIEEIL RERSKKVTAT GQYSKSPNAT  180
ATAKVDSFMQ FTDKANGRPA LNLERRLDHD GHPLAIATVD VVAANGVPPW NWRETPGNGG  240
DSHGQPFGGR VITVKFGDYT RRIGVDGSTE AIKDTIRSAF GLRTRRAFWL EDEDQVVRCL  300
DRDMPLGNYL LHVDDGLAIR VCHYDESNQL PVHTEEKVFY TEEDYRDFLA RRGWTCLQFD  360
GFRNIDNMDD LQPGAVYRGV R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-53	70	155	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013599911.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228305	1e-180	AK228305.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-74-C23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013599911.1	0.0	PREDICTED: trihelix transcription factor GT-1-like isoform X2
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A0D3DXJ0	0.0	A0A0D3DXJ0_BRAOL; Uncharacterized protein
STRING	Bo8g107400.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]