PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013599910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 394aa MW: 45215.6 Da PI: 7.4996 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 85.2 | 8.1e-27 | 76 | 157 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++ +s +++y++++e XP_013599910.1 76 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHRDRGN---RSAKMSYYKEIE 157 ********************************************************************95...566899***997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-4 | 66 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.979 | 68 | 132 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0096 | 72 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.42E-29 | 74 | 139 | No hit | No description |
Pfam | PF13837 | 3.6E-20 | 75 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 394 aa Download sequence Send to blast |
MFVSDKPRPI DFYKDDNTTT TTARDNMIID VTTNTPGRDL HPHHHHHHLQ PQQILLGESS 60 GEDHEVKAPK KRAETWVQDE TRSLIMFRRG MDGLFNTSKS NKHLWEQISA KMREKGFDRS 120 PTMCTDKWRN LLKEFKKAKH RDRGNRSAKM SYYKEIEEIL RERSKKVTAT GQYSKSPNAT 180 ATAKVDSFMQ FTDKGFDDPS ISFGSVEANG RPALNLERRL DHDGHPLAIA TVDVVAANGV 240 PPWNWRETPG NGGDSHGQPF GGRVITVKFG DYTRRIGVDG STEAIKDTIR SAFGLRTRRA 300 FWLEDEDQVV RCLDRDMPLG NYLLHVDDGL AIRVCHYDES NQLPVHTEEK VFYTEEDYRD 360 FLARRGWTCL QFDGFRNIDN MDDLQPGAVY RGVR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 3e-53 | 70 | 155 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00004 | PBM | Transfer from 920224 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013599910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013599910.1 | 0.0 | PREDICTED: trihelix transcription factor GT-1-like isoform X1 | ||||
Swissprot | Q9FX53 | 0.0 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A0D3DXJ0 | 0.0 | A0A0D3DXJ0_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g107400.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13450.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|