PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013599882.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 602aa    MW: 67261.5 Da    PI: 10.2221
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013599882.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72.1e-114190247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47
                     + W t+E++ll +a k++G+++W+++a+++     ++ ++ +c++++ ++
   XP_013599882.1 41 QVWGTWEELLLTCAAKRHGSKDWDSVAKEVAsrssLNASAHDCRLKYEDL 90
                     68*********************************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-53792IPR009057Homeodomain-like
PROSITE profilePS512939.1343895IPR017884SANT domain
SMARTSM007174.0E-73993IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-44090IPR009057Homeodomain-like
PfamPF002492.1E-104190IPR001005SANT/Myb domain
CDDcd001672.52E-64391No hitNo description
SMARTSM002972.9E-18270379IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.8E-17272408IPR001487Bromodomain
SuperFamilySSF473708.37E-17273377IPR001487Bromodomain
CDDcd043691.23E-14277374No hitNo description
PfamPF004393.2E-11283364IPR001487Bromodomain
PROSITE profilePS5001412.706289360IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MTREEDTAVT SNGMNDEYAN NINSCSASDN NRNGDANQIS QVWGTWEELL LTCAAKRHGS  60
KDWDSVAKEV ASRSSLNASA HDCRLKYEDL KRRFDDDEDD DGRGNTDDRD GEIVERLRSL  120
RVAELRREVQ RRDESILSLQ LKVKKLEEEN DGDDKPDLEA VRSLNNETEP VRLNRGTTES  180
DHRSMNESNS TASVDKIADH ERLDNSRNPD PAHKAAEEEG EGTVSRRSGM SHSGELGESG  240
TSTGTRKRTR RGQKYMSGED SSIRGGSGGN IKTAGNKSQP LVEIIKLIRS HPQGSVFESR  300
LRSQETKNYK GLIRQHLDIK TIEKKMEKGS YVSSSLSFYR DLKLLFTNAI VFFPTSSSEY  360
MAAQELKTLV STEMKKRNGT SIHSVIKTDA LSLVSRQKPS APPLVACEKK SSALTKTLPS  420
SRLKQKDEKK TREVSEEKTL TTAARSSRRT SNGIEVVAKN TKMGRAKNNK KQKTDSSSDD  480
DDDGDKEETP KTEKKRAVAA SEKKKSVAEF LKRIKTNSPQ KVKETTSKDQ KKSAGNVKKQ  540
NSKAKPRELR SNSTGKKKVD VENNSNKSSS KRKQSKKEAE EVTDAGRESG KDNQQPKKRN  600
RR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1595601PKKRNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013599882.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599882.10.0PREDICTED: uncharacterized protein LOC106307465
RefseqXP_013599883.10.0PREDICTED: uncharacterized protein LOC106307465
RefseqXP_013599884.10.0PREDICTED: uncharacterized protein LOC106307465
TrEMBLA0A0D3DUI50.0A0A0D3DUI5_BRAOL; Uncharacterized protein
STRINGBo8g094870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.10.0DNA-binding bromodomain-containing protein