PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013599834.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 489aa    MW: 54612.9 Da    PI: 4.9963
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013599834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52.1e-07140159626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+ff++ G C++G++C+ +Hg
  XP_013599834.1 140 CKFFMQ-GRCRFGSSCRSSHG 159
                     ******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.535134161IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4134160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5135159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4139160IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-4140159IPR000571Zinc finger, CCCH-type
SMARTSM004431.6E-13296342IPR000467G-patch domain
PfamPF015852.5E-12298340IPR000467G-patch domain
PROSITE profilePS5017412.732298344IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MASEEDKALE DLLDYQLKDQ RESLSAIEEA LASDPSNPEL LSVHEELVGA IKDAEEGLFQ  60
LKRARLLQEA DIVLHGLNNA AAVKPANELE PEREDLDDGS KCRFRHTDGR WYNGRIIGFE  120
GSDSAKISFL TPTSESMMMC KFFMQGRCRF GSSCRSSHGV DVPISSLKNY EQTEWKQSMV  180
GSKIWAVSGS KYEIWRVGEL ESWDDKLQLG GVVFRDDGSS AKLGSDAMVL SEYADDDGEE  240
EEEEEEEEGS DSGSEEESVS SDYDEEFTQG IGILGTTDQR RGGVQNETAI FAKWENHTRG  300
IASKLMANMG YREGMGLGVS GQGRLDPIVA KVLPPKRSLD HALEHIKNGE AKSEKPKKKR  360
SRGGKRKREK KFAEAARAAK QEEESDLFSF INNQERVNGS GETAKKRQHV GPVDRKALVA  420
YEDEVKDLKI QVKKLEEMVK RNKRDQIFSD AATRRLKEVQ KALASTLAAQ ASASNAVESK  480
EKEKKWLKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355370PKKKRSRGGKRKREKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013599834.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599834.10.0PREDICTED: zinc finger CCCH domain-containing protein 22
SwissprotQ9SK490.0C3H22_ARATH; Zinc finger CCCH domain-containing protein 22
TrEMBLA0A0D3DVK50.0A0A0D3DVK5_BRAOL; Uncharacterized protein
STRINGBo8g099560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94371016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.10.0C3H family protein