PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013599788.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 594aa MW: 66498.7 Da PI: 8.6207

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013599788.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C++ F ++ n++rH r+H XP_013599788.1 61 HKCDKCTREFCSPVNFRRHKRMH 83 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.346	61	88	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence Send to blast
MELVKQDGND SLDMLIRRAV GKDPFLTFHR PENSPVQLFQ LLNTLERPGW PLLAPLKIQL 60 HKCDKCTREF CSPVNFRRHK RMHRRSTKPE KYSAKEKDAL GAFWDELSVF DAKEILSLKN 120 MMLENVRGES VESGLISLIE NPGYTALPQY YLRAGSDLLD IIQGRPLKFP IYSNQLFSIL 180 DDASEKTFMS NEAASMQKYI FDGENGKNVL EAKNVVACAS FLLEQQLIKA WLADKDAEAL 240 RCQNLLVEEE EAAQRRQAEL LERKKRKKLR QKEQRVKDQT KDAKEDESTT SDEQQQSPAE 300 SSRPLSVASD TEAQRSDSIP TENSSSLEEP QVLEIDNERN GETQAPTVDG AGFGNGQNME 360 RRSGRREMER SQYGMPNGFR GNHAPKLGGM RKNGTNRDTR ANTTKVWSRK ADNPKSISPD 420 AVVAEPEQTK NSEVLIGSVS VTIGNSCLSG EHNQAKCSSE EEGRIKAVEA KPTSEQSTVE 480 VSRPVSSQGR KVSTANGNTD KKDKHLSSTQ PEVKTANHIS LQFNNHEAKA FLAKRWKEAI 540 SAEHVTLVLS QETDMPGNNT HESSNGVITA ARPKHRMKPE KGAKVKYVAK QKIP

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence Send to blast

MELVKQDGND SLDMLIRRAV GKDPFLTFHR PENSPVQLFQ LLNTLERPGW PLLAPLKIQL  60
HKCDKCTREF CSPVNFRRHK RMHRRSTKPE KYSAKEKDAL GAFWDELSVF DAKEILSLKN  120
MMLENVRGES VESGLISLIE NPGYTALPQY YLRAGSDLLD IIQGRPLKFP IYSNQLFSIL  180
DDASEKTFMS NEAASMQKYI FDGENGKNVL EAKNVVACAS FLLEQQLIKA WLADKDAEAL  240
RCQNLLVEEE EAAQRRQAEL LERKKRKKLR QKEQRVKDQT KDAKEDESTT SDEQQQSPAE  300
SSRPLSVASD TEAQRSDSIP TENSSSLEEP QVLEIDNERN GETQAPTVDG AGFGNGQNME  360
RRSGRREMER SQYGMPNGFR GNHAPKLGGM RKNGTNRDTR ANTTKVWSRK ADNPKSISPD  420
AVVAEPEQTK NSEVLIGSVS VTIGNSCLSG EHNQAKCSSE EEGRIKAVEA KPTSEQSTVE  480
VSRPVSSQGR KVSTANGNTD KKDKHLSSTQ PEVKTANHIS LQFNNHEAKA FLAKRWKEAI  540
SAEHVTLVLS QETDMPGNNT HESSNGVITA ARPKHRMKPE KGAKVKYVAK QKIP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	268	ERKKRKKL
2	263	267	KKRKK
3	266	276	KKLRQKEQRVK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013599788.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013599780.1	0.0	PREDICTED: neurofilament medium polypeptide-like
Refseq	XP_013599788.1	0.0	PREDICTED: neurofilament medium polypeptide-like
Refseq	XP_022550487.1	0.0	neurofilament medium polypeptide-like
TrEMBL	M4DBP3	0.0	M4DBP3_BRARP; Uncharacterized protein
STRING	Bra013903.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	0.0	C2H2-like zinc finger protein