PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013599653.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 252aa MW: 27709.5 Da PI: 6.8955 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.8 | 5.1e-13 | 95 | 139 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+++++ + ++ G+g+Wk I+r + k Rt+ q+ s+ qky XP_013599653.1 95 AWTESEHKRFLLGLQRVGKGDWKGISRDFVKSRTPTQVASHAQKY 139 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.621 | 88 | 144 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.33E-16 | 90 | 144 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.3E-17 | 91 | 142 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.9E-7 | 92 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-9 | 95 | 139 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.75E-7 | 95 | 140 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-9 | 95 | 139 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAAVSSSSET GGGAAGNEEI MLFGVRVVVD PMRKCVSLNN LSDYEKSSPE EDIPKIGEDK 60 NEPDAITAAG YASANDAVQI TPSSGGNRER KRGIAWTESE HKRFLLGLQR VGKGDWKGIS 120 RDFVKSRTPT QVASHAQKYF LRRTNLNRRR RRSXLFDITT ETVTGMHMEQ DHAQDNSWLH 180 ETNISAGVPV QTRTQENAPQ TFHPYDLSST IVHPVPVTFQ ANPAFNLNTD AAPAMMPSFS 240 DGDSNSNTIR VA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00149 | DAP | Transfer from AT1G19000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013599653.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353076 | 1e-100 | AK353076.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-O16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013599653.1 | 0.0 | PREDICTED: transcription factor MYB1R1-like isoform X2 | ||||
Swissprot | Q2V9B0 | 2e-52 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A3N6RCQ8 | 1e-164 | A0A3N6RCQ8_BRACR; Uncharacterized protein | ||||
STRING | Bo8g102960.1 | 1e-153 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19000.2 | 1e-107 | MYB_related family protein |
Publications ? help Back to Top | |||
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