PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013599524.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 229aa    MW: 25837.9 Da    PI: 6.6654
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013599524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-164388148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + ++T+eE+  l+ ++  lG++ W+ I+++++ gRt++++k++w++yl
   XP_013599524.1 43 KSAFTKEEETTLLSLHSILGNK-WAHISKYLP-GRTDNEIKNYWHSYL 88
                     578*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.066137IPR017877Myb-like domain
SuperFamilySSF466894.61E-232192IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-102348IPR009057Homeodomain-like
PROSITE profilePS5129425.3733892IPR017930Myb domain
SMARTSM007178.3E-164290IPR001005SANT/Myb domain
PfamPF002491.5E-154388IPR001005SANT/Myb domain
CDDcd001678.17E-134588No hitNo description
Gene3DG3DSA:1.10.10.601.3E-204992IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MRSLGVMCSS MAMCAGALFL FKLRNGKSCR LRWVNYLRPG LKKSAFTKEE ETTLLSLHSI  60
LGNKWAHISK YLPGRTDNEI KNYWHSYLKK SVVPSRKDET TRTPQTHSVA NSLEAFESTS  120
ERSSSCSNFG DSFRAKVSNF SPSLVFSEWL DDSLVMDQSP QKYSYVQDHI VPQQSGFVET  180
FSQGFYENNN SLDNFIPNSG FSLEGDIEFC TSFSDSFLVD ALVSEQGSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-22219237108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013599524.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599524.11e-171PREDICTED: transcription factor LAF1 isoform X2
TrEMBLA0A0D3DRH71e-150A0A0D3DRH7_BRAOL; Uncharacterized protein
STRINGBo8g077360.11e-150(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.11e-83myb domain protein 45