PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013599419.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 344aa    MW: 38714.6 Da    PI: 9.6944
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013599419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.56.9e-1364112155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+ +++g
  XP_013599419.1  64 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAHRFRG 112
                     689***9788.8*********3.....5**********99************998 PP
2B398.63.8e-31189291197
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+ tpsdv+k++rlv+pk+ ae+h      g ++ + + l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD + Fk+++ ++
  XP_013599419.1 189 FEKAVTPSDVGKLNRLVIPKHQAEKHfplplsGDVSVRLTLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNGQD 283
                     89******************************88999999*************************************************987788 PP

                     E..EEEEE CS
              B3  90 felvvkvf 97 
                     ++l++++ 
  XP_013599419.1 284 QQLYIGWK 291
                     88999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.00E-2564122No hitNo description
PfamPF008473.1E-864112IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-1764121IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-2065120IPR001471AP2/ERF domain
PROSITE profilePS5103220.08665120IPR001471AP2/ERF domain
SMARTSM003801.9E-2765126IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.9E-38182297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-30187298IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-28188281No hitNo description
PfamPF023621.8E-27189292IPR003340B3 DNA binding domain
SMARTSM010191.1E-23189294IPR003340B3 DNA binding domain
PROSITE profilePS5086313.775189292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDAASSVDES STSTDSVHTP AKIPPATARK SSSPASLYRM GSGSSVVLDS ENGVEAESRK  60
LPSSRFKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA RAYDVAAHRF RGRDAVTNFK  120
ADTTLDNGDE IEFLNAHSKA EIVDMLRKHT YREELEQMKR NLHGKGNTKE TAFAAVRIAT  180
GFKTAETLFE KAVTPSDVGK LNRLVIPKHQ AEKHFPLPLS GDVSVRLTLL NFEDVNGKVW  240
RFRYSYWNSS QSYVLTKGWS RFVKEKRLCA GDLISFKRSN GQDQQLYIGW KSKCESDQDT  300
GRVVVRLFGV DITSLKSQND LVMKEETEML SLRCNKKQRL VTTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-6518530010124DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00031PBMTransfer from AT3G25730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013599419.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599419.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor ARF14
SwissprotQ9LS061e-180RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLA0A3P6EU560.0A0A3P6EU56_BRAOL; Uncharacterized protein
STRINGBra025159.1-P0.0(Brassica rapa)
STRINGBo2g138650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-174ethylene response DNA binding factor 3