PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013599414.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARR-B | ||||||||
Protein Properties | Length: 588aa MW: 65877.4 Da PI: 6.156 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 80.9 | 1.4e-25 | 192 | 245 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+ Wt eLH++F+ av++L G ekA Pk+il+lm+v+ Lt+e+v+SHLQk+R+ XP_013599414.1 192 KPRVLWTRELHNKFLAAVDHL-GVEKAQPKKILDLMNVDKLTRENVASHLQKFRS 245 79*******************.********************************7 PP | |||||||
2 | Response_reg | 88.5 | 1.8e-29 | 19 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+++ +++l+++l + +y +v+++d+++ alell+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++++++ + +k G XP_013599414.1 19 VLAVDDDQTCLRILETLLHRCQY-HVTTTDSAQTALELLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMKGVKHG 111 799********************.***************888888*******************87754.558********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + XP_013599414.1 112 ACDYLLKPVRIEELKN 127 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.6E-153 | 1 | 521 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 8.68E-37 | 16 | 137 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.5E-43 | 16 | 168 | No hit | No description |
SMART | SM00448 | 2.1E-34 | 17 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.87 | 18 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.5E-26 | 19 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.25E-29 | 20 | 132 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 189 | 250 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.382 | 189 | 248 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.75E-19 | 190 | 249 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-23 | 192 | 245 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.7E-6 | 196 | 243 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 588 aa Download sequence Send to blast |
MTVEQDFEAV DQFPVGMRVL AVDDDQTCLR ILETLLHRCQ YHVTTTDSAQ TALELLRENK 60 NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD PKYVMKGVKH GACDYLLKPV 120 RIEELKNIWQ HVVRKSKFKK MKSIVIHDES SQGNSDQNGV KANRKRKDQF EEVEEEDEER 180 GNENDDPTAQ KKPRVLWTRE LHNKFLAAVD HLGVEKAQPK KILDLMNVDK LTRENVASHL 240 QKFRSALKKI TNEANQQASM AAIDSHFMQM SSLKGLGGFH HQRQIPLGSG QFHGGAATMR 300 HYPLGRLNSF GGVFPHVSSS LPRNHNDGGG YILQGMPIPP LDDLHINNNN KAFPGFSSQQ 360 SSLMVAPNNQ LVLQGHQQSS YPSLNPGLSP HFEINKRLED WSNALLSTNI PQSDVHSKPD 420 ALEWNHFCNS DAAQAGFIDP LQMKQQPANN LGPMTDAQRL RSSNPNEGLF VGQQKLENDT 480 MPSNAGSLDD IVNSMMPKEQ SQAEFFEGDW GLDGIIAHSE HAYENLFYVF YVLGQHEKEC 540 FIQTQSFSII FGSGLFVCSL CKETASSCLQ VSPQVLATLG DPKAFNKF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-32 | 188 | 251 | 1 | 64 | ARR10-B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and leaves. {ECO:0000269|PubMed:15173562}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00072 | SELEX | Transfer from AT4G31920 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013599414.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353533 | 0.0 | AK353533.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-C17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013599414.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: two-component response regulator ARR10 | ||||
Swissprot | O49397 | 0.0 | ARR10_ARATH; Two-component response regulator ARR10 | ||||
TrEMBL | A0A0D3DHA4 | 0.0 | A0A0D3DHA4_BRAOL; Two-component response regulator | ||||
STRING | Bo7g115520.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1981 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 0.0 | response regulator 10 |