PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013599405.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 376aa MW: 41464.8 Da PI: 6.4625 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.9 | 9.8e-28 | 137 | 191 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kp+++WtpeLH++Fveave+L G +kA+P++ile+m+vk+L +++v+SHLQkYR++ XP_013599405.1 137 KPKVDWTPELHRKFVEAVERL-GVDKAVPSRILEIMNVKSLNRHNVASHLQKYRSH 191 79*******************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.204 | 134 | 193 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-27 | 135 | 194 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.16E-18 | 135 | 194 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.2E-25 | 137 | 191 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.1E-7 | 140 | 189 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MMLTVSPLVV NTTSRDHYMA ADFADFTTEG LPDFTAEEGS LDVLEGIDFY DDLFIEFNGD 60 DVLPDLEIDS DVLGEYSGSG RDEELEMEGN TSAASETSER DGGWCKPEGT DKTVRKGKRK 120 GKKSKDCLSS DNGIKKKPKV DWTPELHRKF VEAVERLGVD KAVPSRILEI MNVKSLNRHN 180 VASHLQKYRS HRKHLLAREA EAASWNLRRH ATVAVPEGGE KVSMALPALG YPQHVTPLHQ 240 GHFRPLHVWG HPTWPKHKPN NPSSSPHRTF PVPPAVAIPP SCWPGQLPYW HLQTLYPQGY 300 GMASSNHSSI GVPTRPLGPT NPPIDIHPSN ESIDAALGDV ITKPWLPLPL GLNPPSVDGV 360 MTELQRQGIS NVPPLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-17 | 135 | 189 | 3 | 57 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 122 | RKGKRKGKK |
2 | 117 | 125 | KRKGKKSKD |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons and rosette and cauline leaves. Expressed at low levels in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:12220263}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013599405.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013599405.1 | 0.0 | PREDICTED: transcription activator GLK2 | ||||
Refseq | XP_013723734.1 | 0.0 | transcription activator GLK2-like | ||||
Swissprot | Q9FFH0 | 0.0 | GLK2_ARATH; Transcription activator GLK2 | ||||
TrEMBL | A0A0D3D8V4 | 0.0 | A0A0D3D8V4_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g067200.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2209 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44190.1 | 1e-176 | GOLDEN2-like 2 |