PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013599236.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 191aa    MW: 21007.2 Da    PI: 7.7288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013599236.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-182877255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  XP_013599236.1 28 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 77
                    69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8132885IPR001471AP2/ERF domain
SMARTSM003809.1E-392891IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-212986IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-302986IPR001471AP2/ERF domain
PfamPF008473.9E-122977IPR001471AP2/ERF domain
CDDcd000183.64E-272987No hitNo description
PRINTSPR003675.2E-92940IPR001471AP2/ERF domain
PRINTSPR003675.2E-95167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
METAMEVAAA VPTSTVAAAA AARKREKPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST  60
PEAAARAYDT AVFYLRGPSA RLNFPELLAG VTVAGGNGGG DMSAAYIRRK AAEVGAQVDA  120
LEAAGGNRHH HHQQYQRGNH DYVDDDHSVN HSNYRLNDGQ HECSSKDKRC NGSWEAVDLN  180
KLPDPETSDD D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152785463ATERF1
3gcc_A2e-152785463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00020PBMTransfer from AT4G36900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013599236.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325120.0AC232512.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065B14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599236.11e-141PREDICTED: ethylene-responsive transcription factor RAP2-10-like isoform X1
SwissprotQ9SW632e-87RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLA0A0D3DI451e-140A0A0D3DI45_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F6I71e-140A0A3P6F6I7_BRAOL; Uncharacterized protein
STRINGBo7g118430.11e-141(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.11e-82related to AP2 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]