PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598464.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 455aa    MW: 50560.1 Da    PI: 5.2785
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598464.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.63e-5091361128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+GfrF+Ptdeelv +yL++k++g++ e+ +vi+evdi+k+ePwdLp+   vk++++ew fF++ d+ky++g r nrat +gyWkatgkd+ v+
  XP_013598464.1   9 LPVGFRFSPTDEELVRYYLRQKINGRDEEV-RVIREVDICKSEPWDLPHlsVVKTTDSEWLFFCPIDRKYPSGGRMNRATLAGYWKATGKDRMVK 102
                     79*************************998.99***************4457888999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +++ +g+k+tLvfykgrapkg++t W+mheyr+
  XP_013598464.1 103 T-GKKFIGVKRTLVFYKGRAPKGTRTCWIMHEYRA 136
                     9.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-575159IPR003441NAC domain
PROSITE profilePS5100554.9399159IPR003441NAC domain
PfamPF023652.3E-2510135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MEVLSLDSLP VGFRFSPTDE ELVRYYLRQK INGRDEEVRV IREVDICKSE PWDLPHLSVV  60
KTTDSEWLFF CPIDRKYPSG GRMNRATLAG YWKATGKDRM VKTGKKFIGV KRTLVFYKGR  120
APKGTRTCWI MHEYRATEQD LDGTKPGQNP FVICKLFKKQ DVVHPEDLKS CEMEPAVSSP  180
TEVSEVSLAF PKTEETKPSD VAESSFAVSG ECHSEVSAPE VATSEQLDNI DWTSYLELET  240
LDYNIFSPLD SQLQSELGTS FNGFPSGSTE LFSNQDEAPV QAQAQAQFCS NDIDQSMFEL  300
LDSVLEFPSE FPEQKHVVQQ APEIMTYEPR SLVNTSNKIS NDVSGTGIKI RARRAPAPGG  360
AEQFGMQGNA PRRLRLQVNH KSEADSPQLQ CIKQEVKDAA EETVTKGCGS FMRSKSSSIF  420
KNIAAMGGSY RGLFKAGVVA VVFAISVCSL TGKFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-46416012166NO APICAL MERISTEM PROTEIN
1ut4_B8e-46416012166NO APICAL MERISTEM PROTEIN
1ut7_A8e-46416012166NO APICAL MERISTEM PROTEIN
1ut7_B8e-46416012166NO APICAL MERISTEM PROTEIN
4dul_A8e-46416012166NAC domain-containing protein 19
4dul_B8e-46416012166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598464.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4204410.0KJ420441.1 Brassica napus NAC transcription factor 91-2 (NAC91-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598464.10.0PREDICTED: NAC domain-containing protein 62 isoform X1
SwissprotQ9LKG80.0NAC91_ARATH; NAC domain-containing protein 91
TrEMBLA0A0D3DD200.0A0A0D3DD20_BRAOL; Uncharacterized protein
STRINGBo7g096710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.20.0TCV-interacting protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ben Daniel BH, et al.
    Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens.
    Physiol Plant, 2016. 157(4): p. 422-41
    [PMID:26923089]
  3. Li Y, et al.
    The interaction between Turnip crinkle virus p38 and Cucumber mosaic virus 2b and its critical domains.
    Virus Res., 2016. 222: p. 94-105
    [PMID:27288723]