PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013598135.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SBP | ||||||||
Protein Properties | Length: 384aa MW: 43190.9 Da PI: 8.2593 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.9 | 3.8e-40 | 166 | 242 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq++gCe dls+ak+yhr+h+vCe hsk+p+v vsg+e+rfCqqCsrfh++sefDe+krsCr+rL++hn+rrrk+q XP_013598135.1 166 RCQIDGCELDLSSAKDYHRKHRVCENHSKCPKVSVSGIERRFCQQCSRFHAVSEFDETKRSCRKRLSHHNARRRKPQ 242 6**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.4E-33 | 159 | 228 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.188 | 164 | 241 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.45E-37 | 165 | 242 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-30 | 167 | 240 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MDCNMRSPFL WDLENLILPN SSKTENDKDQ LTTATEWETD KGEGIESMFP CFNGVDRVSN 60 CSTTSLWDTP VSKSSQSTST NSSSPGVKQR MLASESSRGD SCCNIDLVQV KASVASAESD 120 LSLKLGKRTY SEEFWGRNNN NDISLTPPVV TRKKSKTCGQ SMQVPRCQID GCELDLSSAK 180 DYHRKHRVCE NHSKCPKVSV SGIERRFCQQ CSRFHAVSEF DETKRSCRKR LSHHNARRRK 240 PQGVFPFNPD RVYDRRQHTN MLWNGLSLDT RSEEKFAWET TNDIKPTQTE SSFTLSFQRG 300 NGSEQQLFAS SNHSYSAYQT SGGFSAGKPK FQLHGQGVGE YSGVLHESRE FHRALSLLST 360 SSDHLVQPHA QPLSLLFSYD GVPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-26 | 167 | 240 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00161 | DAP | Transfer from AT1G27360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013598135.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013598135.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 11 | ||||
Refseq | XP_013598136.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 11 | ||||
Refseq | XP_013598137.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 11 | ||||
Refseq | XP_013598138.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 11 | ||||
Swissprot | Q9FZK0 | 0.0 | SPL11_ARATH; Squamosa promoter-binding-like protein 11 | ||||
TrEMBL | A0A0D3D6H0 | 0.0 | A0A0D3D6H0_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g049950.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5004 | 16 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27360.4 | 0.0 | squamosa promoter-like 11 |
Publications ? help Back to Top | |||
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