PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597998.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 397aa    MW: 44536.1 Da    PI: 5.9273
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597998.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.6e-09332386146
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                      r+ WT+eE+e l+ +v+++  +      W++I ++      ++Rt+ ++k++w++
   XP_013597998.1 332 RLFWTPEEEEMLKVGVEKFSAEakknmPWRKILEMGEdvfhETRTPADLKDKWRN 386
                      678*****************************99887*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579038.16E-783138IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.4E-486133IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd154893.31E-488133No hitNo description
PROSITE profilePS500907.793327388IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.8E-9327388IPR009057Homeodomain-like
SuperFamilySSF466897.4E-10330387IPR009057Homeodomain-like
SMARTSM007170.002331390IPR001005SANT/Myb domain
CDDcd116601.66E-10335386No hitNo description
PfamPF002495.1E-6335386IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MRSKSFAVRS RPHRASRNTL DPYPSPAPLP GEANERVASG VSTKHCVSGD AERVPFDERD  60
VPSKKRHCPG TSETTRGGGG GGSNLEACIV CDLSDEGVSR CSGAGCILWF HGECLNPDLG  120
SGEDLAKTYC PYCWFRVLMM KDKSVREKTV GAESKDHSVD RTDVVRDQEL GGKKDVCSSE  180
KEQLQVEKDS DRSREEEMPL TEERGYQHQE DTEKFQDAEE DKDDEETTKD QTTGGAGGKG  240
DVSGEEQDQS QQNEKPRRRR RQLTYSEISS DESTNERHGE GVTEQITSSA QVVTSTSGAM  300
KNQQRKHSLI TKVAESKAVR DMSSFKTDQR KRLFWTPEEE EMLKVGVEKF SAEAKKNMPW  360
RKILEMGEDV FHETRTPADL KDKWRNRMGV RSAKKTN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597998.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937358e-66AB493735.1 Arabidopsis thaliana At5g03780 mRNA for hypothetical protein, partial cds, clone: RAAt5g03780.
GenBankAK1178778e-66AK117877.1 Arabidopsis thaliana At5g03780 mRNA for myb like protein, complete cds, clone: RAFL19-05-H14.
GenBankAY5195438e-66AY519543.1 Arabidopsis thaliana MYB transcription factor (At5g03780) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597998.10.0PREDICTED: uncharacterized protein LOC106306077
TrEMBLA0A078JSP10.0A0A078JSP1_BRANA; BnaCnng59970D protein
STRINGBra037494.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-06MYB_related family protein