PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013597572.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 296aa MW: 33278.6 Da PI: 10.0807

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013597572.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.9	1.3e-23	64	144	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+l+Li+ ++e++ +++rg lk ++Wee+s + ++ g+ers++qC++k+e+l+kr+++++++++ s +p+++q+e XP_013597572.1 64 WTEDETLLLIDSYKEKWYDVGRGPLKSNQWEEISVSVsARSGVERSATQCRHKMEKLRKRFRAERQSMGPI-----SIWPFYSQME 144 *********************************998899************************84.....68*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-20	64	146	No hit	No description
PROSITE profile	PS50090	6.69	64	121	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MATPSPTPSP PPPPPSDSNP NPPHQNPPPS SFTAIQTPPS PQTTVVALGA STSAFARKTQ 60 PVLWTEDETL LLIDSYKEKW YDVGRGPLKS NQWEEISVSV SARSGVERSA TQCRHKMEKL 120 RKRFRAERQS MGPISIWPFY SQMEELDSNP APISARPLTR LPPPSNHYAE DEDDDDDEDE 180 SLNKSRSINH IVRRPGTVNR FAGVGGGLLQ WGQKERSKRK KKDEGGGGER RMKGARAVAY 240 EIRAFAEKTM VMENKKMEFA KETVKLRKEM EMKRLKLIQS SQAQLLQFLN TSFASF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013597572.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597572.1	0.0	PREDICTED: trihelix transcription factor ASIL1
TrEMBL	A0A0D3D4X4	0.0	A0A0D3D4X4_BRAOL; Uncharacterized protein
STRING	Bo7g031620.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10281	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	1e-121	Trihelix family protein