PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013597228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 24077.2 Da PI: 6.6776 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.9 | 2.1e-09 | 43 | 92 | 2 | 53 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 + h +Er+RR+++ + f+ Lr++lP ++K +e + Av++Ik+ XP_013597228.1 43 KLLHRDIERQRRQEMATLFASLRDHLPLqY---IKGKRAVSEHVGGAVNFIKD 92 6679************************66...999999999**999999996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.41E-12 | 38 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.19E-8 | 39 | 92 | No hit | No description |
PROSITE profile | PS50888 | 11.681 | 41 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-7 | 43 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.3E-7 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDPYQNSNPR GNQEHMPFGS AGDGGSGGSD IPQGTVDNKQ KKKLLHRDIE RQRRQEMATL 60 FASLRDHLPL QYIKGKRAVS EHVGGAVNFI KDTETRIKEL SARRDELIRE TCYTSNPDLA 120 RTASELGNSV PASVMVQPCV SGFEVAVSSD SSGPQALPLS RVLEALQELG LEVISSLTTR 180 VNERLIHTIR VEVNSFGCLN LAWLQQKLVE ELIPSTGNI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013597228.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597228.1 | 1e-162 | PREDICTED: transcription factor bHLH126-like isoform X1 | ||||
Swissprot | Q9STJ6 | 1e-100 | BH126_ARATH; Transcription factor bHLH126 | ||||
TrEMBL | A0A0D3DG30 | 1e-159 | A0A0D3DG30_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g110290.1 | 1e-160 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 1e-103 | bHLH family protein |