PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013597142.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26565.8 Da PI: 9.2076 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60 | 2.9e-19 | 43 | 87 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 ien++ r+ tf kR+ gi+KKA ELS+LCd+ +avi+ s+ + + XP_013597142.1 43 YIENETSRKATFRKRKGGIMKKALELSTLCDVPIAVIVQSEYNSV 87 59**************************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-25 | 34 | 93 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-24 | 34 | 119 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.801 | 34 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.86E-24 | 35 | 119 | No hit | No description |
PRINTS | PR00404 | 5.0E-14 | 36 | 56 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-18 | 44 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-14 | 56 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-14 | 71 | 92 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MILVYVDICM CGCVYKEHYP TLKFIRNKHK KRVMTRNRVK MAYIENETSR KATFRKRKGG 60 IMKKALELST LCDVPIAVIV QSEYNSVPEV FPPSRQAMGN VVARWDSLPL VDKTKKMMNQ 120 EQFIQQRITK ATESCKKVAK ENKELAMKEV MYDCLRGDTA PCDLGEGELR DLGGVIDQYI 180 KGLNRRIQVL MRDHASSSTS VVPDADVATS VAMPTAEMGS SSNVKDFDLN QTQSE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013597142.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597142.1 | 1e-177 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0D3DCK8 | 1e-148 | A0A0D3DCK8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EH82 | 1e-148 | A0A3P6EH82_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g095090.1 | 1e-148 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26630.1 | 2e-59 | M-type_MADS family protein |