PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013597070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24915.9 Da PI: 6.8718 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.1 | 3.4e-16 | 38 | 88 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r +lg++ ta+ Aa+a++ a ++l+g XP_013597070.1 38 KKYKGVRMRS-WGSWVSEIRAP---NQKTRLWLGSYSTAKVAARAYDVALLCLKG 88 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 30 | No hit | No description |
PROSITE profile | PS51032 | 21.272 | 39 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-19 | 39 | 98 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-29 | 39 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-9 | 39 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-32 | 39 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-8 | 40 | 51 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.63E-26 | 42 | 98 | No hit | No description |
PRINTS | PR00367 | 4.4E-8 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MVKQEPKIQT SSKKDMSLTS PSHSSSSSSC KSKKNKIKKY KGVRMRSWGS WVSEIRAPNQ 60 KTRLWLGSYS TAKVAARAYD VALLCLKGPQ ANLNFPTSYS SSHFLLDEST ILSPKSIKRI 120 AAQAANNSFD LFSPCISSAV SSPPDHDQQH DDDGMQSLIG PLVDCHVSLM DTSSSWYDGE 180 HHEMLFFGDG APFDYYPELN STMNMVNDQY FYEDADIPLW SFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 39 | 100 | 14 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013597070.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597070.1 | 1e-166 | PREDICTED: ethylene-responsive transcription factor ERF012-like | ||||
Refseq | XP_013721824.1 | 1e-166 | ethylene-responsive transcription factor ERF012 | ||||
Swissprot | Q9SFE4 | 1e-89 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | A0A0D3D7N0 | 1e-164 | A0A0D3D7N0_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g059990.1 | 1e-165 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2999 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 2e-85 | ERF family protein |
Publications ? help Back to Top | |||
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