PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596728.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 176aa    MW: 19533.4 Da    PI: 6.0191
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596728.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.5e-31115173159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYG+K+vk+s++pr+Y++C+  gCpvkk+ver+ +dp++v++tYeg Hnh+
  XP_013596728.1 115 LDDGFKWRKYGKKMVKNSPNPRNYFKCSADGCPVKKRVERDGDDPSFVITTYEGFHNHS 173
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-33101174IPR003657WRKY domain
SuperFamilySSF1182901.07E-27108173IPR003657WRKY domain
PROSITE profilePS5081129.218110175IPR003657WRKY domain
SMARTSM007742.5E-36115174IPR003657WRKY domain
PfamPF031061.4E-24116172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MNDAETNLGR RFSDDTYSGF DLPDLYLSDE WMDDDLVSAV SGMNHSYGYE TSDSAHAAAF  60
FSGSSSGYGH PESPCTNASV AAATPTASAE KQIKKEKKKV KERVAFKTQS EVEVLDDGFK  120
WRKYGKKMVK NSPNPRNYFK CSADGCPVKK RVERDGDDPS FVITTYEGFH NHSSIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-26105172774Probable WRKY transcription factor 4
2lex_A6e-26105172774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596728.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596728.11e-130PREDICTED: probable WRKY transcription factor 50
RefseqXP_022561792.11e-130probable WRKY transcription factor 50
RefseqXP_022561862.11e-130probable WRKY transcription factor 50
SwissprotQ8VWQ55e-89WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A078IRM81e-129A0A078IRM8_BRANA; BnaC07g49530D protein
TrEMBLA0A0D3DCP21e-129A0A0D3DCP2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E4Y51e-129A0A3P6E4Y5_BRAOL; Uncharacterized protein
STRINGBo7g095430.11e-129(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.16e-75WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]