PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013596670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 313aa MW: 35406 Da PI: 6.6987 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83 | 3e-26 | 121 | 183 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 ldDg++WrKYGqK++ g++fpr+YYrCt++ gC+++k+v+rs+e+ ++ +ei Y+g H ++ XP_013596670.1 121 LDDGFSWRKYGQKDILGAKFPRGYYRCTYRksqGCEATKQVQRSNENHQMlFEISYRGIHSCS 183 59***************************98889***********99987479*******997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.0E-25 | 118 | 184 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-22 | 120 | 184 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.187 | 121 | 171 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-37 | 121 | 184 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-25 | 122 | 182 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MERKSNSGEW EKMKKEISEL MTEGRDYAHE LKSQLGSSSS DQESREHLAK KILESYHKSL 60 TIMNHSGELD QVSPHIHGGG SPKSDDSDQE PHQNMKSSKK SMPRWTEKVR ITPGAEIDRT 120 LDDGFSWRKY GQKDILGAKF PRGYYRCTYR KSQGCEATKQ VQRSNENHQM LFEISYRGIH 180 SCSQAANVRS AIPVRVLEPN QPQEHENLEM VKESLDAGHH NYNHQAHLHQ TLQYHLSSTP 240 TLESNNMMLQ LADQNIDLFG STSFSSDLGA NVNYDYLASH NIGSVSHSTS NSPSESPFES 300 FDPNNPFKGF GGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-18 | 121 | 180 | 14 | 74 | Disease resistance protein RRS1 |
5w3x_D | 1e-18 | 121 | 180 | 14 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates during developmental leaf senescence. {ECO:0000269|PubMed:22268143}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00525 | DAP | Transfer from AT5G24110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013596670.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:22268143}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430047 | 0.0 | KF430047.1 Brassica rapa WRKY transcription factor 30 (WRKY30) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596670.1 | 0.0 | PREDICTED: probable WRKY transcription factor 30 | ||||
Swissprot | Q9FL62 | 1e-157 | WRK30_ARATH; Probable WRKY transcription factor 30 | ||||
TrEMBL | A0A0D3DD66 | 0.0 | A0A0D3DD66_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g097170.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12595 | 19 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 1e-146 | WRKY DNA-binding protein 30 |
Publications ? help Back to Top | |||
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