PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013596661.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 180aa MW: 20040.7 Da PI: 7.6732 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.8 | 4.6e-09 | 16 | 63 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +E++RR +++ +eL llP+ + l+ + L +A +YIk+Lq XP_013596661.1 16 RKTIEKNRRIQMKALSSELNALLPQT---SRAPLTLPDQLDEAANYIKKLQ 63 5789*********************9...8999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.245 | 11 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-8 | 16 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-8 | 16 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-5 | 17 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MDQSLSNTSQ SRSVDRKTIE KNRRIQMKAL SSELNALLPQ TSRAPLTLPD QLDEAANYIK 60 KLQVNLEKMT ERKRKLAATG SSSMPSSVDV SVPRRLPKIE IQETGSILHV FLVTSVEHKF 120 IFHEIISVLS DESGAEITHA GSSTVDDTVF HTLHCKVEDC DYGASSRISE SLKKLVNNFN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013596661.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC172878 | 1e-168 | AC172878.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence. | |||
GenBank | AC241020 | 1e-168 | AC241020.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596661.1 | 1e-130 | PREDICTED: transcription factor bHLH36-like | ||||
Swissprot | F4JIJ7 | 1e-80 | BH162_ARATH; Transcription factor bHLH162 | ||||
TrEMBL | A0A0D3DF77 | 1e-129 | A0A0D3DF77_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g107250.1 | 1e-130 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 6e-81 | bHLH family protein |
Publications ? help Back to Top | |||
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