PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596473.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 246aa    MW: 28404.3 Da    PI: 9.6816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596473.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.2e-0990136355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r h + Er RR++ ++++  L++llP        K +K +i+ekAv+ I++L+
  XP_013596473.1  90 RRHMMKERTRREKQKQSYLALQSLLPAT------KSDKNSIVEKAVDQIRKLE 136
                     5699***********************9......788888**********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1184150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.48E-985140No hitNo description
Gene3DG3DSA:4.10.280.102.8E-886153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.86187135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-690136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-793141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDFFSLDSVF QEEGENFWDM IAGDVSGDGD GDKTVGVPNR SAFRSYVRDH EQRMVSSSST  60
VNVKRRMVNL LRKNWEEKKI VAVPEKERSR RHMMKERTRR EKQKQSYLAL QSLLPATKSD  120
KNSIVEKAVD QIRKLEGLKK ELERQKNVLE AKSAREHDGM NGTKVRFNVQ EPLSGIDSVV  180
EVLQCLKSMG TNLNAVQANF SPHEFSATMN IETQIRGEEV EKRVQKRLQE TEWKLLFLPE  240
ASFLRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596473.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894020.0AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence.
GenBankAC1895910.0AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596473.10.0PREDICTED: transcription factor bHLH92-like isoform X2
SwissprotQ9FIX51e-116BH092_ARATH; Transcription factor bHLH92
TrEMBLA0A3P6EN391e-180A0A3P6EN39_BRAOL; Uncharacterized protein
STRINGBo7g065640.11e-157(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-119bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]