PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596407.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 423aa    MW: 47731.8 Da    PI: 9.6096
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-0591112223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C  Cgk F+++  L  H+ +H
  XP_013596407.1  91 YCRECGKGFPSSKALCGHMASH 112
                     5*******************99 PP
2zf-C2H211.90.00068367389123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  XP_013596407.1 367 HECPICFRVFKSGQALGGHKRSH 389
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.9E-6634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.77E-8731No hitNo description
PROSITE profilePS5015711.302936IPR007087Zinc finger, C2H2
SMARTSM003550.12931IPR015880Zinc finger, C2H2-like
PfamPF139123.9E-5933IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576674.77E-885112No hitNo description
PROSITE profilePS5015710.69990117IPR007087Zinc finger, C2H2
SMARTSM003550.01690112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
PfamPF139125.6E-592114IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974367389IPR007087Zinc finger, C2H2
SMARTSM003550.14367389IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-10367389IPR007087Zinc finger, C2H2
PROSITE patternPS000280369389IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MEQCIEKRFV CKFCNKRFTC GKSLGGHIRT HMSNKNSADS DEDEHNKLMI DENGGQSSYG  60
LRENPKKNKR FVDQREMMAL KHQQHQPQLL YCRECGKGFP SSKALCGHMA SHSEREKIVM  120
DSQSDTEASL STIRRRSKRA VKHHHGSSIM IQYDAASFDE SDIEPEQEQM ALSLMMLSRD  180
DSGFKKGHNL VVNNSFAESS DNNSVILETK SSSGEQLKKI FKVKGFCKKD KLGGGVDHLR  240
NGEDNGYVSD NSDSGYFRNG PKKLGSDVTI DGFLRNKAAM GFNSSENKSL NRFRAGSERS  300
SSTKYDLRKS RTSFPTYGRK KIKYELTESV YDSGDQHSLE TESCAETIKI RSKPPMVKKA  360
KKKSKGHECP ICFRVFKSGQ ALGGHKRSHF IGNHEHRTLV IQQHQVAHEM HTIIDLNLPA  420
PID
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596407.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894291e-153AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
GenBankHM5609661e-153HM560966.1 Brassica rapa subsp. chinensis C2H2 zinc finger transcription factor (MF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596407.10.0PREDICTED: zinc finger protein ZAT9-like
RefseqXP_013721773.10.0zinc finger protein ZAT9
TrEMBLA0A078G5F70.0A0A078G5F7_BRANA; BnaC07g12310D protein
TrEMBLA0A0D3D6U00.0A0A0D3D6U0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ETC90.0A0A3P6ETC9_BRAOL; Uncharacterized protein
STRINGBo7g054120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein