PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013596373.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 725aa MW: 81183.2 Da PI: 7.554

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013596373.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.8	4.3e-28	470	520	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i+l+ l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_013596373.1 470 EKDITLDILRQHFAGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKIKKV 520 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.086	456	540	IPR003035	RWP-RK domain
Pfam	PF02042	3.9E-25	473	520	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	2.1E-17	634	721	No hit	No description
SuperFamily	SSF54277	8.41E-18	635	722	No hit	No description
SMART	SM00666	1.7E-19	637	724	IPR000270	PB1 domain
PROSITE profile	PS51745	21.763	637	724	IPR000270	PB1 domain
CDD	cd06407	1.32E-32	638	721	No hit	No description
Pfam	PF00564	4.9E-15	639	722	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006107	Biological Process	oxaloacetate metabolic process
GO:0006108	Biological Process	malate metabolic process
GO:0005515	Molecular Function	protein binding
GO:0050152	Molecular Function	omega-amidase activity

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence Send to blast
MLASISSLXY TQSWLTNFIC RSLVHHILVI YLLSVNIGAY MLMQMEESNN SGVVDFPDNF 60 MDQLLWEECR XEEEKVSLWS SLGLKERVTC AMGHLQEVMG GEKELLIQLW VPVERGRRRV 120 LSTEEQPYSL NLFSQSQSQS QSLALYGDIS AGYSFAAEVG SDQLVGLPGG VFLNRMPEWT 180 PDVRFFRSEE YLRIGYAHRY QVRASLALPL FQGPSGTCMG VLEMITTHPS LEYGSQLQTI 240 RHALQAFDLR SSETSIVPTS LKPHTDDLHR EVASILKGIC ISYGLPLAIT WGHQQDSCLS 300 AIVSACYPSD QNSHSFLDAC SEHHLLAKEG IAGRAFATKK QYFAKDVAIL SHYAKMFDLH 360 AALAIPLLTR CSRNVQFVIE FFFPRDYCLI NQRPRIATQL SLRFQSSPHL MVDDDQLAEE 420 VTASEQLVAE CMSRKGKGKD VSVSWEMREP SFSSSSSSYL ESRKRKRRDE KDITLDILRQ 480 HFAGSLKDAA KNIGVCPTTL KRICRQHGIS RWPSRKIKKV GHSLRKLQVV MDSVEGVQGS 540 HHLASFYSSF PQLQSPLQLD PTKSVAKSPP PSSSSSSSGS STCCSSEEKQ LGGGFHKPSS 600 QVLLTLSSSL MKDEQRPVRA TSSLPPLPSA RKAKDDGMKV NAMFGDAKMR MRLKHHWGIA 660 DLRREIAKGF GMDGDALTSN FSLKYMDDDE EWVLLTCDAD LEECIQIYKS SLYKETVRIS 720 VSSLL

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence Send to blast

MLASISSLXY TQSWLTNFIC RSLVHHILVI YLLSVNIGAY MLMQMEESNN SGVVDFPDNF  60
MDQLLWEECR XEEEKVSLWS SLGLKERVTC AMGHLQEVMG GEKELLIQLW VPVERGRRRV  120
LSTEEQPYSL NLFSQSQSQS QSLALYGDIS AGYSFAAEVG SDQLVGLPGG VFLNRMPEWT  180
PDVRFFRSEE YLRIGYAHRY QVRASLALPL FQGPSGTCMG VLEMITTHPS LEYGSQLQTI  240
RHALQAFDLR SSETSIVPTS LKPHTDDLHR EVASILKGIC ISYGLPLAIT WGHQQDSCLS  300
AIVSACYPSD QNSHSFLDAC SEHHLLAKEG IAGRAFATKK QYFAKDVAIL SHYAKMFDLH  360
AALAIPLLTR CSRNVQFVIE FFFPRDYCLI NQRPRIATQL SLRFQSSPHL MVDDDQLAEE  420
VTASEQLVAE CMSRKGKGKD VSVSWEMREP SFSSSSSSYL ESRKRKRRDE KDITLDILRQ  480
HFAGSLKDAA KNIGVCPTTL KRICRQHGIS RWPSRKIKKV GHSLRKLQVV MDSVEGVQGS  540
HHLASFYSSF PQLQSPLQLD PTKSVAKSPP PSSSSSSSGS STCCSSEEKQ LGGGFHKPSS  600
QVLLTLSSSL MKDEQRPVRA TSSLPPLPSA RKAKDDGMKV NAMFGDAKMR MRLKHHWGIA  660
DLRREIAKGF GMDGDALTSN FSLKYMDDDE EWVLLTCDAD LEECIQIYKS SLYKETVRIS  720
VSSLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	462	467	RKRKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013596373.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrate. {ECO:0000269\|PubMed:15375205}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013596373.1	0.0	PREDICTED: LOW QUALITY PROTEIN: protein NLP3
Swissprot	Q9SVF1	0.0	NLP3_ARATH; Protein NLP3
TrEMBL	A0A0D3DII3	0.0	A0A0D3DII3_BRAOL; Uncharacterized protein
STRING	Bo7g119810.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15287	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	0.0	Nin-like family protein

Publications ? help Back to Top
Doidy J, et al. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". BMC Genomics, 2016. 17: p. 92 [PMID:26843062]