PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596326.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 209aa    MW: 22537.5 Da    PI: 8.104
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-0587109123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ CgksF++   L  H  +H
  XP_013596326.1  87 YKCSVCGKSFPSYQALGGHKTSH 109
                     9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-986109No hitNo description
PROSITE profilePS5015710.78387114IPR007087Zinc finger, C2H2
PfamPF139121.2E-1487111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-487109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002287109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-9142169No hitNo description
PfamPF139124.2E-12146171IPR007087Zinc finger, C2H2
SMARTSM003550.35147169IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12147169IPR007087Zinc finger, C2H2
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MALDTLNSPT STTAPPPFLT KPENLESWTK RKRTKRHRTV DQSHPPSEEE YLAICLLMLA  60
RGSSSTNDGN DHHSPPAPPS DHDHRDYKCS VCGKSFPSYQ ALGGHKTSHR KPVSNINCQD  120
TINSGNGSVT NNGNISNGLI GQSGKTHKCS ICFKSFPSGQ ALGGHKRCHY DGGNGNGSNN  180
HGFDLNLPAD HDETLXKSQL SGEESKSVS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596326.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329781e-56AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4.
GenBankBT0293771e-56BT029377.1 Arabidopsis thaliana At3g49930 mRNA, complete cds.
GenBankCP0026861e-56CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596326.11e-153PREDICTED: LOW QUALITY PROTEIN: zinc finger protein AZF1
SwissprotQ9SSW14e-63AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A3N6QF901e-130A0A3N6QF90_BRACR; Uncharacterized protein
STRINGBra012914.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.19e-61C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]