PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013596182.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BES1 | ||||||||
Protein Properties | Length: 303aa MW: 33025.8 Da PI: 8.6124 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 206.6 | 6.9e-64 | 10 | 143 | 2 | 145 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqs 96 ++gr+ptwkErEnnk+RERrRRai+akiy+GLRaqGnyklpk++DnneVlkALc eAGw+ve+DGttyrkg+kp ++ s++ss+q XP_013596182.1 10 SAGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEEDGTTYRKGFKPS--------PTNFSTNSSIQP 96 79************************************************************************9........677888888899 PP DUF822 97 slkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145 s++ssa++sp++sy+ sp sssfpsps++d ++++ llp+l++ ++ XP_013596182.1 97 SPQSSAFPSPAPSYHGSPVSSSFPSPSRYDANPSS--YLLLPFLHNIAS 143 999*****************************987..899999998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 2.9E-58 | 11 | 127 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MAAGGGGSSS AGRTPTWKER ENNKKRERRR RAITAKIYSG LRAQGNYKLP KHCDNNEVLK 60 ALCLEAGWIV EEDGTTYRKG FKPSPTNFST NSSIQPSPQS SAFPSPAPSY HGSPVSSSFP 120 SPSRYDANPS SYLLLPFLHN IASSIPSNLP PLRISNSAPV TPPLSSPTSR GSKRKLTTEQ 180 LPNGGSLLRH PLFAISAPSS PTRRGGHQTP PTIPECDESE EDSVEDSGRW ISFQSTAPPS 240 PTFNLVQQTS MEIDMKRPEW GMNARGSEFE FENGTVKPWE GEMIHEVGVE DLELTLGGTK 300 TRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 8e-27 | 13 | 93 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 8e-27 | 13 | 93 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 8e-27 | 13 | 93 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 8e-27 | 13 | 93 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00474 | DAP | Transfer from AT4G36780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013596182.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY050394 | 2e-75 | AY050394.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds. | |||
GenBank | AY097357 | 2e-75 | AY097357.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596182.1 | 0.0 | PREDICTED: BES1/BZR1 homolog protein 2 | ||||
Swissprot | Q94A43 | 1e-171 | BEH2_ARATH; BES1/BZR1 homolog protein 2 | ||||
TrEMBL | A0A0D3A1G4 | 0.0 | A0A0D3A1G4_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g005400.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11512 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36780.1 | 8e-84 | BES1/BZR1 homolog 2 |