PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596160.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 270aa    MW: 31139.4 Da    PI: 5.9484
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.45.4e-34301212102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k++ei+ed+++++++sw++ g+sfvv+d ++f++ +Lp++Fkhsnf+SF+RQLn+YgF+k++ e+         weF+++ F  g+++ll++
  XP_013596160.1  30 FLIKTFEIVEDPNTDHIVSWNRGGTSFVVWDLHSFSEFLLPRHFKHSNFSSFIRQLNTYGFRKIEAER---------WEFANEGFLLGQRHLLKS 115
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr++s
  XP_013596160.1 116 IKRRAS 121
                     ***976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3526119IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.13E-3326119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.4E-5426119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-183053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-2930119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0032268Biological Processregulation of cellular protein metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MNPFPVQEGD PPVSPPKPVE GLHEIGPPPF LIKTFEIVED PNTDHIVSWN RGGTSFVVWD  60
LHSFSEFLLP RHFKHSNFSS FIRQLNTYGF RKIEAERWEF ANEGFLLGQR HLLKSIKRRA  120
SFALSSSSIQ DPCIELRKEK QLLLMELVSL RQQQETNKSY IKAMEQRIEG AEKKQRKMMS  180
FLARAMQSPS FLHQLLKQRD MRVKELEDEA AERGRGSSVS ELEALALEMQ GYGKQKNVKE  240
EEDMVVEREL DDGFWEELLS IEGLASTSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-222812118122Heat shock factor protein 1
5d5u_B1e-222812127131Heat shock factor protein 1
5d5v_B1e-222812127131Heat shock factor protein 1
5d5v_D1e-222812127131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0497117e-56AL049711.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15.
GenBankCP0026867e-56CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596160.10.0PREDICTED: heat stress transcription factor A-7a-like
SwissprotQ9SV121e-147HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLA0A0D3DE300.0A0A0D3DE30_BRAOL; Uncharacterized protein
STRINGBo7g101300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-149heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]