PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013596007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 285aa MW: 32949 Da PI: 9.918 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 150.4 | 8.8e-47 | 7 | 134 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 pGfrFhPt+eel+++yLk+ v gk++++ evi ++iy+++PwdLp+ + +e+ewyfF++r++k+ g r++r+t++gyWkatg+d++++s+ XP_013596007.1 7 LPGFRFHPTEEELLDFYLKNMVYGKRCKV-EVIGFLNIYRHDPWDLPRLSTIGEREWYFFVPRERKHGDGGRPSRITEKGYWKATGSDRKIISSs 100 59***************************.99***************7777799**************************************986 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLvfy+grap g+ktdWvm+e+r+ XP_013596007.1 101 ePKRMIGLKKTLVFYTGRAPGGTKTDWVMNEFRM 134 66677***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.347 | 6 | 152 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.32E-55 | 7 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-24 | 8 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MSKEIQLPGF RFHPTEEELL DFYLKNMVYG KRCKVEVIGF LNIYRHDPWD LPRLSTIGER 60 EWYFFVPRER KHGDGGRPSR ITEKGYWKAT GSDRKIISSS EPKRMIGLKK TLVFYTGRAP 120 GGTKTDWVMN EFRMPDNLTL PKNVVLCKIY RKATSLKVLE QRAEMEAKMN QTRPSSPLSS 180 SETNSLAGKE EDVMMTSFPF PQAEAMKQPN HILMLQEHNE NAKNKEKQRE AERKQPSSSL 240 KLPSGVLPIP ELQLPKQGFE LGQDQFLSIS PWLQNLTPII NLLYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-45 | 8 | 155 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-45 | 8 | 155 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-45 | 8 | 155 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-45 | 8 | 155 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-45 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swm_B | 8e-45 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swm_C | 8e-45 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swm_D | 8e-45 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_A | 8e-45 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_B | 8e-45 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_C | 8e-45 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3swp_D | 8e-45 | 8 | 155 | 22 | 171 | NAC domain-containing protein 19 |
3ulx_A | 9e-45 | 8 | 152 | 17 | 168 | Stress-induced transcription factor NAC1 |
4dul_A | 8e-45 | 8 | 155 | 19 | 168 | NAC domain-containing protein 19 |
4dul_B | 8e-45 | 8 | 155 | 19 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013596007.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF738270 | 0.0 | KF738270.1 Brassica napus NAC transcription factor 36 (NAC36.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596007.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Refseq | XP_013748869.1 | 0.0 | NAC domain-containing protein 35-like isoform X1 | ||||
Refseq | XP_013748870.1 | 0.0 | NAC domain-containing protein 35-like isoform X2 | ||||
Swissprot | Q10S65 | 9e-88 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A0D3D3K5 | 0.0 | A0A0D3D3K5_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g015050.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3899 | 28 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 1e-157 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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