PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595937.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 380aa    MW: 41512.1 Da    PI: 7.7455
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595937.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.4e-07104126426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       C+ f+ +G C++Gd C FaHg
  XP_013595937.1 104 DVCPEFRHGGDCSRGDECGFAHG 126
                     57********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.06E-599130IPR000571Zinc finger, CCCH-type
SMARTSM003560.029100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.235101128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-5104128IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4105126IPR000571Zinc finger, CCCH-type
SMARTSM003563136159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDVEHHNSGH IGRPTVVIPS RKLLSSAKSP SSASSPRRDG NDQKDYHYDS DSDDPYAGDH  60
FRMYEFKIRR CTRSRSHDWT DCPFSHPGEK ARRRDPRRYH YTGDVCPEFR HGGDCSRGDE  120
CGFAHGVFEC WLHPSRYRTE ACKDGKQCTR KICFFAHSPP QLRVLPPPES FVSGGGGSAL  180
SSPASVLSNK SNGCCVFCSH SPTSPLLGLA HSPSSSPPLS PANKVAAVSR LSSHRSAVKY  240
KEVLNELINS LDSFGLTQAL TAASPSSMVT MPVSTASMLA SSSLSNHYHH RLPPWLDVGD  300
RDLQFALSPS STPSYLNGQL QLQLQPPPPS FFSEEFTPRG GRVSDFTATA TAAAEARDKS  360
SFEIGSNGDL DLGWVNDLLT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595937.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595937.10.0PREDICTED: zinc finger CCCH domain-containing protein 61-like
RefseqXP_013723711.10.0zinc finger CCCH domain-containing protein 61
SwissprotQ9FKW21e-174C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLA0A0D3D8V80.0A0A0D3D8V8_BRAOL; Uncharacterized protein
STRINGBo7g067240.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-144C3H family protein