PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595932.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 401aa    MW: 43747.4 Da    PI: 5.5762
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595932.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.5e-31200258259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers+ dp++++itY++eHnh+
  XP_013595932.1 200 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRADPSMLVITYTSEHNHP 258
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-31193260IPR003657WRKY domain
PROSITE profilePS5081132.558194260IPR003657WRKY domain
SuperFamilySSF1182904.18E-26197260IPR003657WRKY domain
SMARTSM007743.4E-38199259IPR003657WRKY domain
PfamPF031066.9E-26201258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDNFQGDLTD VVRGIGGHML SPEISSSPNI LPLPQPSPSD LHMNPFGDPF VSMTDPLLQE  60
LNAVTNSSHF STAGYNANNN NGFLVPKVVL EDDQIKSQCS IFPRIRISHS NIIHESSPCN  120
SPAMSTHVVA AASPRGIINA NTNSPRNCLL VDGNTFSSQI QISSPRNIGL KRRKSQAKKV  180
VCIPAPAAMN SRSSGEVVPS DLWAWRKYGQ KPIKGSPFPR GYYRCSSSKG CSARKQVERS  240
RADPSMLVIT YTSEHNHPWP IQRNALAGST RSCSSNPNSS KSSTATASLN DPQNNTHLPS  300
SASPPLSAFA VKNEQREEDM ELENVEDDDD NKIAPYRPEI HDQHQPDDFF ADLEELELEG  360
DSLRMLLSQG CAGDLNNETI ASDGISDFFG WTGGNNNKDD Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-24174260279Disease resistance protein RRS1
5w3x_D1e-24174260279Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595932.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896280.0AC189628.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595932.10.0PREDICTED: probable WRKY transcription factor 14
SwissprotQ9SA800.0WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A0D3D5R30.0A0A0D3D5R3_BRAOL; Uncharacterized protein
STRINGBo7g043420.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.10.0WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]