PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013595930.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 312aa MW: 34958.1 Da PI: 6.7234

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013595930.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.4	3.4e-34	166	223	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+ XP_013595930.1 166 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHP 223 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	5.6E-107	1	312	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	1.1E-35	150	225	IPR003657	WRKY domain
SuperFamily	SSF118290	9.81E-30	157	225	IPR003657	WRKY domain
PROSITE profile	PS50811	32.856	160	225	IPR003657	WRKY domain
SMART	SM00774	8.0E-40	165	224	IPR003657	WRKY domain
Pfam	PF03106	2.0E-26	166	223	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MSNETKDFYN YQFPSSFSLY EMMNLPTSAP SSYGNNGFDP SSYSFTDCLQ SSPGAYDSLL 60 QKTFGLSPSS SEVFNSSIDQ ESKRDVTNDV TGETPTRVSA PSSSSEADHP GEDSGKSQIR 120 KRELAEDGGE ENQNSKKVGK TKKNEEKKQR EPRVSFMTKS EVDHLEDGYR WRKYGQKAVK 180 NSPYPRSYYR CTTQKCNVKK RVERSFQDPT VVITTYEGQH NHPIPTNLRG SSAAAAMYSD 240 FMTPRSFTHD MFRTAAYTSG GSVEGALDYG YGQSGYGSVN ANPNSSHQNY HQGGEYELLK 300 EILPSIFFKQ EH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-29	156	225	8	77	Probable WRKY transcription factor 4
2lex_A	1e-29	156	225	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00440	DAP	Transfer from AT4G18170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013595930.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430045	0.0	KF430045.1 Brassica rapa WRKY transcription factor 28 (WRKY28) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013595930.1	0.0	PREDICTED: probable WRKY transcription factor 28
Swissprot	Q8VWJ2	0.0	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A0D3DET2	0.0	A0A0D3DET2_BRAOL; WRKY transcription factor
TrEMBL	A0A3P6ER93	0.0	A0A3P6ER93_BRAOL; WRKY transcription factor
STRING	Bo7g105800.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1524	26	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	1e-173	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]