PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595834.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 316aa    MW: 36568.8 Da    PI: 8.2029
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.8e-083456527
                    --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                    +C  ++ tG+C+yG+rC F+H+p
  XP_013595834.1 34 NCEQYLHTGQCSYGSRCWFNHPP 56
                    7********************96 PP
2zf-CCCH31.43.3e-106084327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     + C  +++tG+C+yG rC+F+H+p
  XP_013595834.1 60 ARDCEQYLQTGQCSYGRRCRFNHSP 84
                    589********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.0052956IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-42956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-53255IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-63456IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-43554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4795785IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-55784IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-86084IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-66187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-66385IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.04794109IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MVVVSLDEVA DTIIHREIRW EMIRCNRVRI GATNCEQYLH TGQCSYGSRC WFNHPPLPGA  60
RDCEQYLQTG QCSYGRRCRF NHSPTHLAPV LPQRVSRQIC KYFQKGGCKP GSSIQYTNSM  120
RGDGIEPMRQ ATTWGRRSDE RRHETESTSR AEKRARTIPD YPSVIQDVSD EVGAGQNSWL  180
QRRRAQENVQ SGKIDCGQRR VSEEERTLRE TVPCSVLVLY SQERQAYDLE EQKQRERVDE  240
NLRIDQIKAT VQSDGGIQTE QRLEIPENLQ EQAEMEREKR EAQKKERSRS LTDNVDQLIQ  300
SLQDNIGIRR KKGDGA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595834.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595834.10.0PREDICTED: putative zinc finger CCCH domain-containing protein 9
TrEMBLA0A0D3D6060.0A0A0D3D606_BRAOL; Uncharacterized protein
STRINGBo7g045340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14832817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.19e-14C3H family protein