PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595591.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 345aa    MW: 38957.5 Da    PI: 6.5855
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595591.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.1e-08120140526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck Gd+C FaHg
  XP_013595591.1 120 ACPDFRK-GGCKKGDSCEFAHG 140
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0867104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.26E-5114144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-6115142IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6115141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.92115142IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-6120140IPR000571Zinc finger, CCCH-type
SMARTSM003560.53150173IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.568150174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MIIGETRRTY PTVEIPTWPV SEDFTKSELF SPAMSSPDCS MLEALAALQR YLPSNEPDTD  60
LFGPDSPVDA YSCDHFRMYD FKVRRCARGR SHDWTECPYA HPGEKARRRD PTKYNYSGTA  120
CPDFRKGGCK KGDSCEFAHG VFECWLHPAR YRTQPCKDGG NCRRRVCFFA HSPDQLRCLH  180
NRSPDQVDSF DVSSPVRRAF QLSVSSVSSS PPMSPRADSE TQSLSHSVVS SFRNLQFEKV  240
KSFPSSYNNP LRCYQSGFGS PRGSILGHGF QSLPTTPIRP GSMDIWDNGL EEEPAMERVV  300
ESGRELRAKM FEKLSKDNCM DRVEPDQDQN SGEAPDVGWV SELLM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.9551e-146leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013595591.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528161e-127AK352816.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-K04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595591.10.0PREDICTED: zinc finger CCCH domain-containing protein 49
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A0D3DGR30.0A0A0D3DGR3_BRAOL; Uncharacterized protein
STRINGBo7g113610.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.10.0C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]